RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 WASF3Q9UPY6 502 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 ATP11BQ9Y2G3 1177 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 HES2Q9Y543 173 aa5.33□□□□□ -1.56
LDLR-209ENST00000558528 PLXNA1Q9UIW2 1896 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 FLNBO75369 2602 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 PTPRJQ12913 1337 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 FAM170AA1A519 330 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 A8MXQ7 604 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 MIF4GDA9UHW6 222 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 B4E171 279 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 H7C4K7 107 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 MYO1FO00160 1098 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 PTGESO14684 152 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 HGSO14964 777 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 SYN3O14994 580 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 AREL1O15033 823 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TADA2AO75478 443 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 LEFTY1O75610 366 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 B3GAT3O94766 335 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 MTA2O94776 668 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 APOL3O95236 402 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 PRLP01236 227 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 MMEP08473 750 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 PLEKP08567 350 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 UNGP13051 313 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 TCP1P17987 556 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 CD58P19256 250 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 XPAP23025 273 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 SLC7A1P30825 629 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CDH5P33151 784 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 MLH1P40692 756 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CETN2P41208 172 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TSPAN7P41732 249 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 STAT5AP42229 794 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 PAFAH1B1P43034 410 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 AARSP49588 968 aaKnown RBP eCLIP5.32□□□□□ -1.56
LDLR-209ENST00000558528 SCNN1GP51170 649 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CLCN7P51798 805 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 NDST1P52848 882 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 NKX6-1P78426 367 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 TSPY1Q01534 308 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 FMO1Q01740 532 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 APBA1Q02410 837 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 DSC2Q02487 901 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CKAP4Q07065 602 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 MMRN1Q13201 1228 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 ZNF268Q14587 947 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 ACAP1Q15027 740 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 UPP1Q16831 310 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 GLRA4Q5JXX5 417 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TAF3Q5VWG9 929 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 PRAMEF9Q5VWM5 478 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 ARHGAP17Q68EM7 881 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 OGFOD3Q6PK18 319 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 LCLAT1Q6UWP7 414 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SYT10Q6XYQ8 523 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TBC1D1Q86TI0 1168 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 RTN4RL1Q86UN2 441 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 ERICH1Q86X53 443 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 LIX1LQ8IVB5 337 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 DCP1BQ8IZD4 617 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 ADGRF2Q8IZF7 708 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 OR8H2Q8N162 312 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 GPR161Q8N6U8 529 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 UBL4BQ8N7F7 174 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CEP112Q8N8E3 955 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CDYL2Q8N8U2 506 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 ATP11CQ8NB49 1132 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 HIPK4Q8NE63 616 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 MNS1Q8NEH6 495 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 LNX1Q8TBB1 728 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 CALML6Q8TD86 181 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 IPO4Q8TEX9 1081 aaKnown RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 ASB15Q8WXK1 588 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 RFFLQ8WZ73 363 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 HERVK_113Q902F9 699 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 KAT5Q92993 513 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 C18orf8Q96DM3 657 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SLC35A4Q96G79 324 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SENP8Q96LD8 212 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 HSFY1Q96LI6 401 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 NAP1L3Q99457 506 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 TREX2Q9BQ50 279 aaPredicted RBP5.32□□□□□ -1.56
LDLR-209ENST00000558528 ACBD6Q9BR61 282 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SYT11Q9BT88 431 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TRIM62Q9BVG3 475 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SYNCQ9H7C4 482 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CNTD2Q9H8S5 307 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 ADAM22Q9P0K1 906 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CTTNBP2NLQ9P2B4 639 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 GULP1Q9UBP9 304 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 AMFRQ9UKV5 643 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TBX21Q9UL17 535 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 CDH9Q9ULB4 789 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SSX2IPQ9Y2D8 614 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.32□□□□□ -1.56
LDLR-209ENST00000558528 FAM208BQ5VWN6 2430 aa5.32□□□□□ -1.56
LDLR-209ENST00000558528 TMEM82A0PJX8 343 aa5.31□□□□□ -1.56
LDLR-209ENST00000558528 MACROD2A1Z1Q3 448 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms