RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 ATP13A4Q4VNC1 1196 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TIGD2Q4W5G0 525 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 YIF1BQ5BJH7 314 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 PITRM1Q5JRX3 1037 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TMEM31Q5JXX7 168 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 GARNL3Q5VVW2 1013 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 AFMIDQ63HM1 303 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 PYHIN1Q6K0P9 492 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CXorf57Q6NSI4 855 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 OGFOD3Q6PK18 319 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 MEX3BQ6ZN04 569 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 ETV3LQ6ZN32 361 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 DCDC5Q6ZRR9 648 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TOM1L2Q6ZVM7 507 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 R3HCC1LQ7Z5L2 792 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 NEK8Q86SG6 692 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 ZAR1Q86SH2 424 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 LHFPL3Q86UP9 236 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 ZNF589Q86UQ0 364 aaPredicted RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 FAM160B2Q86V87 743 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 VSTM4Q8IW00 320 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TMEM192Q8IY95 271 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CELF2-AS1Q8N7Q2 184 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 C2orf69Q8N8R5 385 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TTC29Q8NA56 475 aaPredicted RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 CCDC197Q8NCU1 140 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 ADAMTS18Q8TE60 1221 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 SLC5A11Q8WWX8 675 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 PYDC1Q8WXC3 89 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 LPGAT1Q92604 370 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CENPIQ92674 756 aaPredicted RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 DPF2Q92785 391 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 HDAC10Q969S8 669 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 ZNF669Q96BR6 464 aaPredicted RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 SGCZQ96LD1 299 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 AK8Q96MA6 479 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 C7orf26Q96N11 449 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 SERPINB12Q96P63 405 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 KCNS3Q9BQ31 491 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 C19orf43Q9BQ61 176 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 FERMT1Q9BQL6 677 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CNPY3Q9BT09 278 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TEKT3Q9BXF9 490 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CELF4Q9BZC1 486 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 OR2B2Q9GZK3 357 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.29□□□□□ -1.4
TDP1-215ENST00000556498 DDX47Q9H0S4 455 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 KCNH6Q9H252 994 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 DCLRE1BQ9H816 532 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 ERVMER34-1Q9H9K5 563 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 KANSL2Q9H9L4 492 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 PDE7BQ9NP56 450 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 SARS2Q9NP81 518 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 ARHGEF3Q9NR81 526 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 C19orf12Q9NSK7 152 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CYP39A1Q9NYL5 469 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TAS2R3Q9NYW6 316 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 VSX1Q9NZR4 365 aaPredicted RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 ADAM22Q9P0K1 906 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 ACTR3BQ9P1U1 418 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 TRMT6Q9UJA5 497 aaKnown RBP6.29□□□□□ -1.4
TDP1-215ENST00000556498 CDH9Q9ULB4 789 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 CRYL1Q9Y2S2 319 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 NUP155O75694 1391 aa6.29□□□□□ -1.4
TDP1-215ENST00000556498 SHROOM2Q13796 1616 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 STK36Q9NRP7 1315 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 PCF11O94913 1555 aaKnown RBP6.28□□□□□ -1.4
TDP1-215ENST00000556498 TTC26A0AVF1 554 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 FAM86C2PA6NEL3 165 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 FAM47DPA6NHR8 397 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 H0YIN7 160 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 TXNDC9O14530 226 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 NPC1O15118 1278 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 CLDN3O15551 220 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 ARHGAP6O43182 974 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 HCRTR2O43614 444 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 ATG13O75143 517 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 LEFTY1O75610 366 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 EOMESO95936 686 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 PROCP04070 461 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 GNAI2P04899 355 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 KRT8P05787 483 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 LYNP07948 512 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 GNAI3P08754 354 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 H2AFB1P0C5Y9 115 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 H2AFB2P0C5Z0 115 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 MYBL1P10243 752 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 PAMP19021 973 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 ITGALP20701 1170 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 CXCR2P25025 360 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 GTF2H1P32780 548 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 SERPINB5P36952 375 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 GSTM5P46439 218 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 RPL5P46777 297 aaKnown RBP6.28□□□□□ -1.4
TDP1-215ENST00000556498 ALDH1A3P47895 512 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 CASP5P51878 434 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 HNRNPKP61978 463 aaKnown RBP eCLIP6.28□□□□□ -1.4
TDP1-215ENST00000556498 NFKB2Q00653 900 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 UBE3AQ05086 875 aa6.28□□□□□ -1.4
TDP1-215ENST00000556498 PRKCZQ05513 592 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms