RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 NT5MQ9NPB1 228 aa14.74□□□□□ -0.05
SHMT2-210ENST00000553950 RAB6BQ9NRW1 208 aa14.74□□□□□ -0.05
SHMT2-210ENST00000553950 WHRNQ9P202 907 aa14.74□□□□□ -0.05
SHMT2-210ENST00000553950 SHOC2Q9UQ13 582 aa14.74□□□□□ -0.05
SHMT2-210ENST00000553950 ERVW-1Q9UQF0 538 aa14.74□□□□□ -0.05
SHMT2-210ENST00000553950 MRPS17Q9Y2R5 130 aaKnown RBP14.74□□□□□ -0.05
SHMT2-210ENST00000553950 STARD13Q9Y3M8 1113 aa14.74□□□□□ -0.05
SHMT2-210ENST00000553950 FARP1Q9Y4F1 1045 aaPredicted RBP14.74□□□□□ -0.05
SHMT2-210ENST00000553950 C5orf42Q9H799 3197 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 TCF20Q9UGU0 1960 aaKnown RBP14.73□□□□□ -0.05
SHMT2-210ENST00000553950 DNALI1O14645 258 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-210ENST00000553950 ATP9BO43861 1147 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 SERPINF2P08697 491 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 RHOXF2BP0C7M4 288 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 SRCP12931 536 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 ITIH2P19823 946 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 TPSB2P20231 275 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 TNFRSF8P28908 595 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 RPL22P35268 128 aaKnown RBP14.73□□□□□ -0.05
SHMT2-210ENST00000553950 CSNK1DP48730 415 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 LMAN1P49257 510 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 VPS41P49754 854 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 SARNPP82979 210 aaKnown RBP14.73□□□□□ -0.05
SHMT2-210ENST00000553950 GUCY2DQ02846 1103 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 RAD51Q06609 339 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 ITKQ08881 620 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 SEMA5AQ13591 1074 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 MORF4L2Q15014 288 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 TPSAB1Q15661 275 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 FNDC3BQ53EP0 1204 aaKnown RBP14.73□□□□□ -0.05
SHMT2-210ENST00000553950 DUPD1Q68J44 220 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 LINGO4Q6UY18 593 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 PPIL6Q8IXY8 311 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 TTC8Q8TAM2 541 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 USP33Q8TEY7 942 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHMT2-210ENST00000553950 NUDCD1Q96RS6 583 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 RHOXF2Q9BQY4 288 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 TSPYL1Q9H0U9 437 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 C10orf88Q9H8K7 445 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 HEBP1Q9NRV9 189 aa14.73□□□□□ -0.05
SHMT2-210ENST00000553950 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 ZBTB24O43167 697 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 SEC31AO94979 1220 aaKnown RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 NFKB1P19838 968 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 PSMB4P28070 264 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 MAGEA6P43360 314 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 SLC6A11P48066 632 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 SOX9P48436 509 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 MPP3Q13368 585 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 TRIP13Q15645 432 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 TMEM196Q5HYL7 178 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 IZUMO3Q5VZ72 239 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 NAPEPLDQ6IQ20 393 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 ZNF852Q6ZMS4 543 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 TPRG1Q6ZUI0 275 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 B4GALNT4Q76KP1 1039 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 LRRN4CLQ8ND94 238 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 OR2AP1Q8NGE2 309 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 IMP4Q96G21 291 aaKnown RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 TUBGCP5Q96RT8 1024 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 FSD1LQ9BXM9 530 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 CEP41Q9BYV8 373 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 FOXP3Q9BZS1 431 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 LRRC40Q9H9A6 602 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 FBRSQ9HAH7 460 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 SCUBE2Q9NQ36 999 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 ARHGEF3Q9NR81 526 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 LHX3Q9UBR4 397 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 WNT16Q9UBV4 365 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 MTRF1LQ9UGC7 380 aaKnown RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 FBXL21Q9UKT6 434 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 TPX2Q9ULW0 747 aaKnown RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 XIRP2A4UGR9 3374 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 EYSQ5T1H1 3165 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 SPTBN5Q9NRC6 3674 aaKnown RBP14.72□□□□□ -0.05
SHMT2-210ENST00000553950 F5P12259 2224 aa14.72□□□□□ -0.05
SHMT2-210ENST00000553950 EDDM13A0A1B0GTR0 161 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 A0A1W2PQ67 120 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 ALOX15BO15296 676 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 NARSO43776 548 aaKnown RBP14.71□□□□□ -0.05
SHMT2-210ENST00000553950 SOCS5O75159 536 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 ZSCAN5DPP0CG00 497 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 HNRNPLP14866 589 aaKnown RBP eCLIP14.71□□□□□ -0.05
SHMT2-210ENST00000553950 STK19P49842 368 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-210ENST00000553950 SLC7A5Q01650 507 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 LRRC32Q14392 662 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 CYTH1Q15438 398 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 ACCSLQ4AC99 568 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 SLC44A4Q53GD3 710 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 TMEM215Q68D42 235 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 SDE2Q6IQ49 451 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 WDR93Q6P2C0 686 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 SERPINA13PQ6UXR4 307 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 LINC00523Q86TU6 105 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 KLHDC8BQ8IXV7 354 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 CNTD1Q8N815 330 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 TSEN2Q8NCE0 465 aaKnown RBP14.71□□□□□ -0.05
SHMT2-210ENST00000553950 LRRN4Q8WUT4 740 aa14.71□□□□□ -0.05
SHMT2-210ENST00000553950 FAM3CQ92520 227 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms