RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 C7orf72A4D263 438 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 H6PDO95479 791 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 LGALS2P05162 132 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 C8BP07358 591 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 CD68P34810 354 aaPredicted RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 PSMD8P48556 350 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 STX5Q13190 355 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 IKBKEQ14164 716 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 BNIPLQ7Z465 357 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 CENPLQ8N0S6 344 aaPredicted RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 WNT8BQ93098 351 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 GFM2Q969S9 779 aaKnown RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 PDGFDQ9GZP0 370 aaPredicted RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 PDGFCQ9NRA1 345 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 CHCHD3Q9NX63 227 aaKnown RBP17.79■□□□□ 0.44
SYNE3-202ENST00000553340 PCDHGA7Q9Y5G6 932 aa17.79■□□□□ 0.44
SYNE3-202ENST00000553340 KCNU1A8MYU2 1149 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 C9IYK1 514 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 NFKB1P19838 968 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 PGGT1BP53609 377 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 ADARP55265 1226 aaKnown RBP17.78■□□□□ 0.44
SYNE3-202ENST00000553340 COG7P83436 770 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 RHDQ02161 417 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 FBXO47Q5MNV8 452 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 GK5Q6ZS86 529 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 PCDH20Q8N6Y1 951 aaKnown RBP17.78■□□□□ 0.44
SYNE3-202ENST00000553340 UNC93B1Q9H1C4 597 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 TRPV6Q9H1D0 765 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 LRRC4Q9HBW1 653 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 PIGVQ9NUD9 493 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 MRGBPQ9NV56 204 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 DNAAF2Q9NVR5 837 aaKnown RBP17.78■□□□□ 0.44
SYNE3-202ENST00000553340 NCKIPSDQ9NZQ3 722 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 A0A1B0GTW7 788 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 TMEM233B4DJY2 109 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 FAM72CH0Y354 149 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 AP3B1O00203 1094 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 SDHDO14521 159 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 SLC25A27O95847 323 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 TPI1P60174 286 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 CDH17Q12864 832 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 PDAP1Q13442 181 aaKnown RBP17.78■□□□□ 0.44
SYNE3-202ENST00000553340 KCTD2Q14681 263 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 UGP2Q16851 508 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 FAM72AQ5TYM5 149 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 FAM72DQ6L9T8 149 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 GADL1Q6ZQY3 521 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 FAM72BQ86X60 149 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 ERI1Q8IV48 349 aaKnown RBP17.78■□□□□ 0.44
SYNE3-202ENST00000553340 SLC41A1Q8IVJ1 513 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 LRTOMTQ8WZ04 291 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 BRD8Q9H0E9 1235 aa17.78■□□□□ 0.44
SYNE3-202ENST00000553340 NPHS1O60500 1241 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 ADRA1BP35368 520 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 MAPRE2Q15555 327 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 DGKDQ16760 1214 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 SYPL2Q5VXT5 272 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 NAPEPLDQ6IQ20 393 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 KRT80Q6KB66 452 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 NUP93Q8N1F7 819 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 PCDHAC1Q9H158 963 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 MYRFQ9Y2G1 1151 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 SQORQ9Y6N5 450 aa17.77■□□□□ 0.44
SYNE3-202ENST00000553340 CCDC78A2IDD5 438 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 E7ENX8 843 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 CSPG5O95196 566 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 AHSGP02765 367 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 CDK9P50750 372 aaKnown RBP17.77■□□□□ 0.43
SYNE3-202ENST00000553340 ZBTB17Q13105 803 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 CARM1Q86X55 608 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 SLC9A7Q96T83 725 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 VAT1Q99536 393 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 TMEM79Q9BSE2 394 aa17.77■□□□□ 0.43
SYNE3-202ENST00000553340 MCM3APO60318 1980 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 DNAJB2P25686 324 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 TKTP29401 623 aaKnown RBP17.76■□□□□ 0.43
SYNE3-202ENST00000553340 ALDH3B2P48448 385 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 RAB10P61026 200 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 VGLL4Q14135 290 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 PIWIL4Q7Z3Z4 852 aaKnown RBP17.76■□□□□ 0.43
SYNE3-202ENST00000553340 PELI3Q8N2H9 469 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 DIS3LQ8TF46 1054 aaKnown RBP17.76■□□□□ 0.43
SYNE3-202ENST00000553340 HDAC11Q96DB2 347 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 KIFC1Q9BW19 673 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 CAAP1Q9H8G2 361 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 PNPLA3Q9NST1 481 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 RHBDL2Q9NX52 303 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 UBP1Q9NZI7 540 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 SNX13Q9Y5W8 968 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 HEATR9A2RTY3 570 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 H3BNH8 94 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 STMN1P16949 149 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 EMP3P54852 163 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 AIF1P55008 147 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 TRAP1Q12931 704 aaKnown RBP17.76■□□□□ 0.43
SYNE3-202ENST00000553340 PRPSAP1Q14558 356 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 ZNF618Q5T7W0 954 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 PTAR1Q7Z6K3 402 aaPredicted RBP17.76■□□□□ 0.43
SYNE3-202ENST00000553340 APPL2Q8NEU8 664 aa17.76■□□□□ 0.43
SYNE3-202ENST00000553340 RIN3Q8TB24 985 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms