RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 ACAD10Q6JQN1 1059 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 ARMCX2Q7L311 632 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SYT13Q7L8C5 426 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 KCTD20Q7Z5Y7 419 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 CPLX4Q7Z7G2 160 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 TLK2Q86UE8 772 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 ARMC8Q8IUR7 673 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SLC15A3Q8IY34 581 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 CCDC105Q8IYK2 499 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 PSD4Q8NDX1 1056 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 VN1R2Q8NFZ6 395 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 RFFLQ8WZ73 363 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 LPIN2Q92539 896 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 STAMQ92783 540 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 NSUN4Q96CB9 384 aaKnown RBP4.08□□□□□ -1.76
LIMA1-208ENST00000551691 HIST1H2AAQ96QV6 131 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 OR14A2Q96R54 314 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 CTAGE1Q96RT6 745 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 DDX23Q9BUQ8 820 aaKnown RBP4.08□□□□□ -1.76
LIMA1-208ENST00000551691 LSM14BQ9BX40 385 aaKnown RBP4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SLC46A2Q9BY10 475 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SIL1Q9H173 461 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 NELFAQ9H3P2 528 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SERHL2Q9H4I8 314 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SEC61A2Q9H9S3 476 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 CLSPNQ9HAW4 1339 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 SALL1Q9NSC2 1324 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 LIN7CQ9NUP9 197 aaKnown RBP4.08□□□□□ -1.76
LIMA1-208ENST00000551691 TMLHEQ9NVH6 421 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 AATFQ9NY61 560 aaKnown RBP eCLIP4.08□□□□□ -1.76
LIMA1-208ENST00000551691 NOL7Q9UMY1 257 aaKnown RBP4.08□□□□□ -1.76
LIMA1-208ENST00000551691 DAPP1Q9UN19 280 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 FREM2Q5SZK8 3169 aa4.08□□□□□ -1.76
LIMA1-208ENST00000551691 PIEZO2Q9H5I5 2752 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ROBO3Q96MS0 1386 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CCDC195A0A1B0GUA6 201 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 C2CD4DB7Z1M9 353 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 F5H0A9 414 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TAF4O00268 1085 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TSPAN4O14817 238 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 PCDH17O14917 1159 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ORC4O43929 436 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CDC14BO60729 498 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 MFAP3LO75121 409 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 LARGE1O95461 756 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 SLC25A27O95847 323 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TOP3BO95985 862 aaKnown RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 HLA-DOAP06340 250 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 DCNP07585 359 aaKnown RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 WEE2P0C1S8 567 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 LINC00271P0C7V0 271 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 SPATA31D3P0C874 917 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 AOC1P19801 751 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ACO1P21399 889 aaKnown RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CTNNB1P35222 781 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 COPB2P35606 906 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 GSTM5P46439 218 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 PGDP52209 483 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 NR1H2P55055 460 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 DCAF7P61962 342 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 COASYQ13057 564 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 PDCLQ13371 301 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 E2F2Q14209 437 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TSTQ16762 297 aaKnown RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ZNF750Q32MQ0 723 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 RILPL1Q5EBL4 403 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CERCAMQ5T4B2 595 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 NAA35Q5VZE5 725 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ANKS6Q68DC2 871 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 FCRL6Q6DN72 434 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TATDN1Q6P1N9 297 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 C19orf48Q6RUI8 117 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 FAM111BQ6SJ93 734 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TMEM108Q6UXF1 575 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 SPATA31D4Q6ZUB0 917 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 B4GALNT4Q76KP1 1039 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ATG9AQ7Z3C6 839 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ADGRA1Q86SQ6 560 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CFAP52Q8N1V2 620 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 FSIP1Q8NA03 581 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 DNAJB14Q8TBM8 379 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ATRIPQ8WXE1 791 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 SUSD6Q92537 303 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 CUL5Q93034 780 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 RNF125Q96EQ8 232 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ZNF503Q96F45 646 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 FAM227BQ96M60 508 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ZNF512Q96ME7 567 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 BBC3Q96PG8 261 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TWNKQ96RR1 684 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 PNKPQ96T60 521 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 GPHA2Q96T91 129 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 TREX2Q9BQ50 279 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 MESP1Q9BRJ9 268 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 AP1M1Q9BXS5 423 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 S1PR5Q9H228 398 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ABHD16BQ9H3Z7 469 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 ERVK-5Q9HDB9 667 aa4.07□□□□□ -1.76
LIMA1-208ENST00000551691 EIF2B3Q9NR50 452 aaKnown RBP4.07□□□□□ -1.76
LIMA1-208ENST00000551691 RAI14Q9P0K7 980 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms