RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 LINC00303Q3SY05 128 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 ZC3H12AQ5D1E8 599 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 SYPL2Q5VXT5 272 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 CXorf57Q6NSI4 855 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 ZCCHC8Q6NZY4 707 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 ABI3BPQ7Z7G0 1075 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 HORMAD1Q86X24 394 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 FAM149B1Q96BN6 582 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 CCNL2Q96S94 520 aaPredicted RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 SLC25A13Q9UJS0 675 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 ZFR2Q9UPR6 939 aaKnown RBP10.76□□□□□ -0.69
VPS29-208ENST00000550267 PCDHGA8Q9Y5G5 932 aa10.76□□□□□ -0.69
VPS29-208ENST00000550267 ARID1BQ8NFD5 2236 aaPredicted RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 A0A1B0GVL5 298 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 A6NNZ2 444 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 RNF103O00237 685 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 ALOX15BO15296 676 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 FBXO21O94952 628 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 RHOBTB3O94955 611 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 CTSLP07711 333 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 PFKFB1P16118 471 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 BRD2P25440 801 aaKnown RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 HNRNPKP61978 463 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS29-208ENST00000550267 ZNF177Q13360 481 aaPredicted RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 CNGA2Q16280 664 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 DCAF17Q5H9S7 520 aaPredicted RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 PERM1Q5SV97 790 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 TCERG1LQ5VWI1 586 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 SEL1L3Q68CR1 1132 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 NEK5Q6P3R8 708 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 TMEM270Q6UE05 265 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 RBM44Q6ZP01 1051 aaKnown RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 Q6ZSR6 202 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 PTAR1Q7Z6K3 402 aaPredicted RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 CLEC14AQ86T13 490 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 GUF1Q8N442 669 aaKnown RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 ARL14Q8N4G2 192 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 ZNF548Q8NEK5 533 aaPredicted RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 OR52K2Q8NGK3 314 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 GRAMD1AQ96CP6 724 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 ALG14Q96F25 216 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 IFT43Q96FT9 208 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 BTN2A3PQ96KV6 586 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 BMFQ96LC9 184 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 HSFY1Q96LI6 401 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 PRMT1Q99873 361 aaKnown RBP10.75□□□□□ -0.69
VPS29-208ENST00000550267 COQ4Q9Y3A0 265 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 PCDHB11Q9Y5F2 797 aa10.75□□□□□ -0.69
VPS29-208ENST00000550267 COL6A6A6NMZ7 2263 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 EME2A4GXA9 379 aaPredicted RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 TCAF2A6NFQ2 919 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 KPNA3O00505 521 aaPredicted RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 PCDH8O95206 1070 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 MYL1P05976 194 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 PAEPP09466 180 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 EPB41P11171 864 aaKnown RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 PITX1P78337 314 aaPredicted RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 CENPCQ03188 943 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 SRSF6Q13247 344 aaKnown RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 FZD2Q14332 565 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 DEFB133Q30KQ1 61 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 ATG14Q6ZNE5 492 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 SH2D3CQ8N5H7 860 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 ATP6V0D2Q8N8Y2 350 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 WDR36Q8NI36 951 aaKnown RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 EXTL1Q92935 676 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 CCDC47Q96A33 483 aaKnown RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 GPR27Q9NS67 375 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 STARD5Q9NSY2 213 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 KLF15Q9UIH9 416 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 ATXN7L1Q9ULK2 861 aaPredicted RBP10.74□□□□□ -0.69
VPS29-208ENST00000550267 PCDHB4Q9Y5E5 795 aa10.74□□□□□ -0.69
VPS29-208ENST00000550267 CCDC187A0A096LP49 1063 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 POM121BA6NF01 834 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 KCNU1A8MYU2 1149 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 MUSKO15146 869 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 CETN3O15182 167 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 RAD51BO15315 384 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 AQP9O43315 295 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 SUV39H1O43463 412 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 TRUB2O95900 331 aaKnown RBP10.73□□□□□ -0.69
VPS29-208ENST00000550267 IGLV3-25P01717 112 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 CSF2P04141 144 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 THBS1P07996 1170 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 SRCP12931 536 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 NME1P15531 152 aaKnown RBP10.73□□□□□ -0.69
VPS29-208ENST00000550267 ITGB6P18564 788 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 TBXAS1P24557 533 aaPredicted RBP10.73□□□□□ -0.69
VPS29-208ENST00000550267 CHRNA3P32297 505 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 IRAK1P51617 712 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 PDX1P52945 283 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 OXCT1P55809 520 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 FGL2Q14314 439 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 NR0B2Q15466 257 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 TGIF1Q15583 401 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 EDRF1Q3B7T1 1238 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 RABGAP1LQ5R372 815 aa10.73□□□□□ -0.69
VPS29-208ENST00000550267 TTC39BQ5VTQ0 682 aaPredicted RBP10.73□□□□□ -0.69
VPS29-208ENST00000550267 FBXL22Q6P050 247 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms