RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NHSL1Q5SYE7 1610 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ZNF197O14709 1029 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ITGALP20701 1170 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 TUFMP49411 452 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 SLC35F5Q8WV83 523 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 APBB2Q92870 758 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 SLC4A5Q9BY07 1137 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 CAAP1Q9H8G2 361 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 TAS2R13Q9NYV9 303 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 MYO7AQ13402 2215 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 PRPF4O43172 522 aaKnown RBP eCLIP15.19■□□□□ 0.023e-6■■□□□ 11.6
CUX1-214ENST00000550008 CLASP2O75122 1294 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 EDNRBP24530 442 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 CRABP2P29373 138 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 RPL14P50914 215 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 GPX6P59796 221 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 MRPS22P82650 360 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 TRMT5Q32P41 509 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 GDF6Q6KF10 455 aaPredicted RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 RHBDF2Q6PJF5 856 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 TMEM110Q86TL2 294 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 NIPA2Q8N8Q9 360 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 DBF4BQ8NFT6 615 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ABTB1Q969K4 478 aaPredicted RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 C17orf80Q9BSJ5 609 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 PDLIM7Q9NR12 457 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 SAR1AQ9NR31 198 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 RIC8BQ9NVN3 520 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ZMYM5Q9UJ78 669 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 MYO18AQ92614 2054 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 TTC24A2A3L6 582 aaPredicted RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 CCNT2O60583 730 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 CTPS1P17812 591 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 SMAD3P84022 425 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 PEX6Q13608 980 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 HECTD3Q5T447 861 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ARHGAP17Q68EM7 881 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ESRP1Q6NXG1 681 aaKnown RBP15.19■□□□□ 0.02
CUX1-214ENST00000550008 LRRC8BQ6P9F7 803 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 ADNPQ9H2P0 1102 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 RNPEPL1Q9HAU8 725 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 LGALS13Q9UHV8 139 aa15.19■□□□□ 0.02
CUX1-214ENST00000550008 hCG_2014768A0A024R1R8 64 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 CFAP99D6REC4 459 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 HDCP19113 662 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 PTPN3P26045 913 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 DSG1Q02413 1049 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 DSC2Q02487 901 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 MAP3K10Q02779 954 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 NFYCQ13952 458 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 BOP1Q14137 746 aaKnown RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 FASTKQ14296 549 aaKnown RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 RETSATQ6NUM9 610 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 RIPOR1Q6ZS17 1223 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 SLC24A5Q71RS6 500 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 ANKS1BQ7Z6G8 1248 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 DENND6AQ8IWF6 608 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 ECSITQ9BQ95 431 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 GGA2Q9UJY4 613 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 NMBRP28336 390 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 MPP2Q14168 576 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 PTPRNQ16849 979 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 IGDCC3Q8IVU1 814 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 ABCG8Q9H221 673 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 TMEM216Q9P0N5 145 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 PCDHGB4Q9UN71 923 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 URB1O60287 2271 aaKnown RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 C10orf71Q711Q0 1435 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 TK2O00142 265 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 SEPT4O43236 478 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 MPSTP25325 297 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 CDK7P50613 346 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 POU5F1Q01860 360 aaKnown RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 SOX4Q06945 474 aaPredicted RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 GRM3Q14832 879 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 PTGR2Q8N8N7 351 aaPredicted RBP15.18■□□□□ 0.02
CUX1-214ENST00000550008 DCBLD1Q8N8Z6 715 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 GID8Q9NWU2 228 aa15.18■□□□□ 0.02
CUX1-214ENST00000550008 TKTP29401 623 aaKnown RBP15.17■□□□□ 0.02
CUX1-214ENST00000550008 CYP2C18P33260 490 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 CXCR3P49682 368 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 ENPEPQ07075 957 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 LINGO4Q6UY18 593 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 TRPC4APQ8TEL6 797 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 FZD10Q9ULW2 581 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 PCDHB9Q9Y5E1 797 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 C5orf60A6NFR6 353 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 MYO1GB0I1T2 1018 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 MYO1DO94832 1006 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 FKBP9O95302 570 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 DPYSL2Q16555 572 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 FKBP9P1Q75LS8 142 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 MYO1HQ8N1T3 1032 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 VPS50Q96JG6 964 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 SH3GL3Q99963 347 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 AAASQ9NRG9 546 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 VPS9D1Q9Y2B5 631 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 USP54Q70EL1 1684 aa15.17■□□□□ 0.02
CUX1-214ENST00000550008 F2P00734 622 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms