RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 MTA1Q13330 715 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 MAPK8IP2Q13387 824 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 STIM1Q13586 685 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 DRAP1Q14919 205 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 DEFB133Q30KQ1 61 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 PERM1Q5SV97 790 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 KIAA1161Q6NSJ0 714 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 GJB7Q6PEY0 223 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 CRTC1Q6UUV9 634 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 DCAF4L2Q8NA75 395 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 KLF6Q99612 283 aaPredicted RBP18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 ARHGEF38Q9NXL2 777 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 PCDHGA8Q9Y5G5 932 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 FADS3Q9Y5Q0 445 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 SNX10Q9Y5X0 201 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 ANKRD36A6QL64 1941 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 HECTD1Q9ULT8 2610 aa18.19■□□□□ 0.5
CLSTN3-214ENST00000542663 PPP1R3GB7ZBB8 358 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 M0QYT0 321 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 AQP9O43315 295 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 DAB1O75553 588 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 AFPP02771 609 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 ERBB2P04626 1255 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 BMP6P22004 513 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 RBMS1P29558 406 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 NEK3P51956 506 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 PDX1P52945 283 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 MARSP56192 900 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 RPS21P63220 83 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 C1QBPQ07021 282 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 KLHL10Q6JEL2 608 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 C11orf57Q6ZUT1 292 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 SETD3Q86TU7 594 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 PASD1Q8IV76 773 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 GRAMD1AQ96CP6 724 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 PPP1R16AQ96I34 528 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 TMPRSS4Q9NRS4 437 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 SALL4Q9UJQ4 1053 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 MAN1B1Q9UKM7 699 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 ATP6V1DQ9Y5K8 247 aa18.18■□□□□ 0.5
CLSTN3-214ENST00000542663 DRGXA6NNA5 263 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 H3BM21 787 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 ENDOD1O94919 500 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 ITGB7P26010 798 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 L1CAMP32004 1257 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 NOS2P35228 1153 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 RABIFP47224 123 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 CXCR3P49682 368 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 APBA1Q02410 837 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 EIF2B5Q13144 721 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 CLN3Q13286 438 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 PDE1CQ14123 709 aaPredicted RBP18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 FOXR2Q6PJQ5 311 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 RBM44Q6ZP01 1051 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 SLC26A9Q7LBE3 791 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 TFAP2DQ7Z6R9 452 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 CLEC14AQ86T13 490 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 OR7D4Q8NG98 312 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 NELFBQ8WX92 580 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 FEM1CQ96JP0 617 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 NPY6RQ99463 290 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 BOCQ9BWV1 1114 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 TKTL2Q9H0I9 626 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 NCKIPSDQ9NZQ3 722 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 MPP6Q9NZW5 540 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 PNMA8BQ9ULN7 279 aaPredicted RBP18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 PCDHGC3Q9UN70 934 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 BSNQ9UPA5 3926 aa18.17■□□□□ 0.5
CLSTN3-214ENST00000542663 TPP1O14773 563 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 AP1G1O43747 822 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 SLC28A2O43868 658 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 TCEA3O75764 348 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 ZMPSTE24O75844 475 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 JUNDP17535 347 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 SLC6A3Q01959 620 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 KCNC4Q03721 635 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 TRIM65Q6PJ69 517 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 CCDC81Q6ZN84 652 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 PARS2Q7L3T8 475 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 ENOSF1Q7L5Y1 443 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 RBFAQ8N0V3 343 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 C1orf131Q8NDD1 294 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 ZNF397Q8NF99 534 aaPredicted RBP18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 LMX1AQ8TE12 382 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 CCDC97Q96F63 343 aaPredicted RBP18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 LENG8Q96PV6 779 aaPredicted RBP18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 C1QTNF2Q9BXJ5 285 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 TCEAL2Q9H3H9 227 aaPredicted RBP18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 WDCPQ9H6R7 721 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 ZNF212Q9UDV6 495 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 GGT7Q9UJ14 662 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 CTNND2Q9UQB3 1225 aa18.16■□□□□ 0.5
CLSTN3-214ENST00000542663 IGLV3-10A0A075B6K4 115 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 RIOK3O14730 519 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 GCATO75600 419 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 PPP1R2P41236 205 aa18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 RECQLP46063 649 aaPredicted RBP18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 SERPINH1P50454 418 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-214ENST00000542663 PFN3P60673 137 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms