RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ELAVL2Q12926 359 aaKnown RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 MSLNQ13421 630 aaPredicted RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 PSMD5Q16401 504 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 ZNF513Q8N8E2 541 aaPredicted RBP13.98□□□□□ -0.17
RTN3-210ENST00000540798 GPR152Q8TDT2 470 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 SEPT8Q92599 483 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 HMCESQ96FZ2 354 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 NSL1Q96IY1 281 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 C1QTNF1Q9BXJ1 281 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 HCSTQ9UBK5 93 aa13.98□□□□□ -0.17
RTN3-210ENST00000540798 A0A096LPK6 155 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 G3V2L1 256 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 CNTN5O94779 1100 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 TBX18O95935 607 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 GALTP07902 379 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 GMPRP36959 345 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 PRMT2P55345 433 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 IRX4P78413 519 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 TAF10Q12962 218 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 TUBB3Q13509 450 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 ALYREFQ86V81 257 aaKnown RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 LCA5Q86VQ0 697 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 PPHLN1Q8NEY8 458 aaKnown RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 N4BP2L2Q92802 583 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 IGSF8Q969P0 613 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 RANBP9Q96S59 729 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 MIPEPQ99797 713 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 TTLL2Q9BWV7 592 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 NMUR2Q9GZQ4 415 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 ZNF358Q9NW07 568 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 BAIAP2L1Q9UHR4 511 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 RPL26L1Q9UNX3 145 aaKnown RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 ANKRD6Q9Y2G4 727 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 COL4A6Q14031 1691 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 MICAL3Q7RTP6 2002 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 EME2A4GXA9 379 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 H7C4K7 107 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 HOXA2O43364 376 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 C2P06681 752 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 MMP2P08253 660 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 F7P08709 466 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 CALB2P22676 271 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 ARRB2P32121 409 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 SLC8A1P32418 973 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 AQP5P55064 265 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 C5orf22Q49AR2 442 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 FBXL22Q6P050 247 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 TTC7BQ86TV6 843 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 PIWIL2Q8TC59 973 aaKnown RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 BCL7CQ8WUZ0 217 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 MRPL9Q9BYD2 267 aaKnown RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 CAB39LQ9H9S4 337 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 MARCH2Q9P0N8 246 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 STK38LQ9Y2H1 464 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 SLC27A5Q9Y2P5 690 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 CPA3P15088 417 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 RENBPP51606 427 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 IRF9Q00978 393 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 GRM3Q14832 879 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 WLSQ5T9L3 541 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 KIAA0930Q6ICG6 404 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 TMEM151AQ8N4L1 468 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 CEP295NLQ96MC4 621 aa13.97□□□□□ -0.17
RTN3-210ENST00000540798 MAGED2Q9UNF1 606 aaPredicted RBP13.97□□□□□ -0.17
RTN3-210ENST00000540798 J3KR12 359 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 CCDC22O60826 627 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 LYPLA1O75608 230 aaPredicted RBP13.96□□□□□ -0.17
RTN3-210ENST00000540798 CPB1P15086 417 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 MTA1Q13330 715 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 POU6F1Q14863 301 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 DLG2Q15700 870 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 ANKS3Q6ZW76 656 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 TMEM173Q86WV6 379 aaPredicted RBP13.96□□□□□ -0.17
RTN3-210ENST00000540798 ATXN7L3BQ96GX2 97 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 BTBD10Q9BSF8 475 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 VPS45Q9NRW7 570 aa13.96□□□□□ -0.17
RTN3-210ENST00000540798 MRPL42Q9Y6G3 142 aaKnown RBP13.96□□□□□ -0.17
RTN3-210ENST00000540798 ZNF195O14628 629 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 AHSGP02765 367 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 CXCL10P02778 98 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 RALBP11234 206 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 WNT3AP56704 352 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 ZBTB16Q05516 673 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 IHHQ14623 411 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 ESRP1Q6NXG1 681 aaKnown RBP13.96□□□□□ -0.18
RTN3-210ENST00000540798 TAS1R1Q7RTX1 841 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 TFAP2DQ7Z6R9 452 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 LONP2Q86WA8 852 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 CCDC106Q9BWC9 280 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 PRKD2Q9BZL6 878 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 IRAK4Q9NWZ3 460 aa13.96□□□□□ -0.18
RTN3-210ENST00000540798 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.96□□□□□ -0.18
RTN3-210ENST00000540798 ATF6P18850 670 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 ABCG1P45844 678 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 ABCE1P61221 599 aaKnown RBP13.95□□□□□ -0.18
RTN3-210ENST00000540798 UGP2Q16851 508 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 NADSYN1Q6IA69 706 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 MAVSQ7Z434 540 aa13.95□□□□□ -0.18
RTN3-210ENST00000540798 RNF168Q8IYW5 571 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms