RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NLRP11P59045 1033 aaKnown RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 UBXN2AP68543 259 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 MS4A2Q01362 244 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FAAP100Q0VG06 881 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 MESDQ14696 234 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ATF7IP2Q5U623 682 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ALKBH2Q6NS38 261 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 C16orf46Q6P387 395 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 DBX2Q6ZNG2 339 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FBXO11Q86XK2 927 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 LACC1Q8IV20 430 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 LGI2Q8N0V4 545 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 RAET1EQ8TD07 263 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 CMTM5Q96DZ9 223 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SAMD11Q96NU1 681 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ZC4H2Q9NQZ6 224 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SLC45A1Q9Y2W3 748 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 PCDHGA7Q9Y5G6 932 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FAM205AQ6ZU69 1335 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ANKRD62A6NC57 917 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FOXN3O00409 490 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FSCN2O14926 492 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 NOS1APO75052 506 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ADAM11O75078 769 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SEC14L2O76054 403 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 IFNA14P01570 189 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 TRIM23P36406 574 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 POLR2IP36954 125 aaKnown RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SOX9P48436 509 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 NAB1Q13506 487 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 TBRG1Q3YBR2 411 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FSCBQ5H9T9 825 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ERAP2Q6P179 960 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ARSKQ6UWY0 536 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 UNC5DQ6UXZ4 953 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 GADL1Q6ZQY3 521 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 TMPRSS9Q7Z410 1059 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 PTAR1Q7Z6K3 402 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 CRLF3Q8IUI8 442 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 LYSMD2Q8IV50 215 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 CCDC103Q8IW40 242 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 OR2T34Q8NGX1 318 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 DLG3Q92796 817 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 FBXW5Q969U6 566 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 PAFAH2Q99487 392 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SERPINI1Q99574 410 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SIX2Q9NPC8 291 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 INTS7Q9NVH2 962 aaKnown RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 ASNSD1Q9NWL6 643 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 SMOXQ9NWM0 555 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 DTLQ9NZJ0 730 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 CHORDC1Q9UHD1 332 aaPredicted RBP9.59□□□□□ -0.87
CLIP1-214ENST00000540539 GJA3Q9Y6H8 435 aa9.59□□□□□ -0.87
CLIP1-214ENST00000540539 YDJCA8MPS7 323 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 A8MV72 311 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SULT1B1O43704 296 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 CDK14O94921 469 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MYF6P23409 242 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MAN1A1P33908 653 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MAGEA11P43364 429 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SLC12A2P55011 1212 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MGAT3Q09327 533 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MTX3Q5HYI7 312 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MFSD14BQ5SR56 506 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 ADGRD1Q6QNK2 874 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PLEKHM3Q6ZWE6 761 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 NIM1KQ8IY84 436 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 POC5Q8NA72 575 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 ARRDC4Q8NCT1 418 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SLC5A5Q92911 643 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 RNF170Q96K19 258 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SYT11Q9BT88 431 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 DHRS4Q9BTZ2 278 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PITHD1Q9GZP4 211 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 ABCB10Q9NRK6 738 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PCDH10Q9P2E7 1040 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 EIF3KQ9UBQ5 218 aaKnown RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 TMEM5Q9Y2B1 443 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 WBP11Q9Y2W2 641 aaKnown RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SBF1O95248 1867 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 BCAS1O75363 584 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PDGFAP04085 211 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 NTRK1P04629 796 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 CYP2D6P10635 497 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 HOXB3P14651 431 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PRDX5P30044 214 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 EPHX2P34913 555 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PRELPP51888 382 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 UBE3AQ05086 875 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 C1QBPQ07021 282 aaKnown RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 ILF2Q12905 390 aaKnown RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 TOP3AQ13472 1001 aaPredicted RBP9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MFSD13AQ14CX5 517 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 CHI3L2Q15782 390 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 CCDC142Q17RM4 750 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 PAGE2BQ5JRK9 111 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 MAMDC4Q6UXC1 1216 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 BBS12Q6ZW61 710 aa9.58□□□□□ -0.88
CLIP1-214ENST00000540539 SLCO6A1Q86UG4 719 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms