RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	ARRB1	P49407	418 aa	Predicted RBP	13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ZNF143	P52747	638 aa	Predicted RBP	13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	AIF1	P55008	147 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	IL9R	Q01113	521 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CAMK2B	Q13554	666 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	STAT4	Q14765	748 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CDO1	Q16878	200 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TMEM259	Q4ZIN3	620 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CARD16	Q5EG05	197 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PRAMEF14	Q5SWL7	426 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PHLDB2	Q86SQ0	1253 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ZSCAN30	Q86W11	494 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	HORMAD1	Q86X24	394 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PROSER1	Q86XN7	944 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GALNT15	Q8N3T1	639 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CCDC185	Q8N715	623 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM174A	Q8TBP5	190 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM172A	Q8WUF8	416 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	VCPIP1	Q96JH7	1222 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	HEPH	Q9BQS7	1158 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SPON2	Q9BUD6	331 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TNKS2	Q9H2K2	1166 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GPR27	Q9NS67	375 aa		13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ZFR2	Q9UPR6	939 aa	Known RBP	13.37	□□□□□ -0.27
SEMA4D-223	ENST00000540475		A0A1W2PQU0	124 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	WASH4P	A8MWX3	477 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	KDELR3	O43731	214 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ITGAV	P06756	1048 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ATP1A3	P13637	1013 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FER	P16591	822 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CDK11B	P21127	795 aa	Known RBP	13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MAT2A	P31153	395 aa	Known RBP	13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ACVRL1	P37023	503 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RECQL	P46063	649 aa	Predicted RBP	13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GEMIN4	P57678	1058 aa	Known RBP	13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TYRO3	Q06418	890 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	BNIP3	Q12983	259 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	POM121L1P	Q3SYA9	428 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ACAD10	Q6JQN1	1059 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ABI3BP	Q7Z7G0	1075 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GATAD2A	Q86YP4	633 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	DRC7	Q8IY82	874 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	BAP1	Q92560	729 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TBC1D31	Q96DN5	1066 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PPP1R16A	Q96I34	528 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SELENOO	Q9BVL4	669 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	NOL6	Q9H6R4	1146 aa	Known RBP	13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RTN4	Q9NQC3	1192 aa	Known RBP	13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TMEM63C	Q9P1W3	806 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FTSJ1	Q9UET6	329 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	HS3ST3A1	Q9Y663	406 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FAM208B	Q5VWN6	2430 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ADAMTS20	P59510	1910 aa		13.36	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LRRK1	Q38SD2	2015 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ENC1	O14682	589 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TEX33	O43247	280 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	BNIP3L	O60238	219 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LDOC1	O95751	146 aa	Predicted RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	GSR	P00390	522 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CCDC172	P0C7W6	258 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	HNRNPA2B1	P22626	353 aa	Known RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CCNH	P51946	323 aa	Predicted RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RPL7A	P62424	266 aa	Known RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	KIAA1161	Q6NSJ0	714 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PPP1R2P3	Q6NXS1	205 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SLFN11	Q7Z7L1	901 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	MCOLN2	Q8IZK6	566 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CACTIN-AS1	Q8N1I8	211 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ASB12	Q8WXK4	309 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RAB7B	Q96AH8	199 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	IFT43	Q96FT9	208 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	KLHDC7B	Q96G42	594 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	LENG8	Q96PV6	779 aa	Predicted RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CNPY3	Q9BT09	278 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	NAT10	Q9H0A0	1025 aa	Known RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	DYRK4	Q9NR20	520 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	KLHL11	Q9NVR0	708 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	HECA	Q9UBI9	543 aa	Predicted RBP	13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	DNAI1	Q9UI46	699 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	FADS3	Q9Y5Q0	445 aa		13.35	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	CCP110	O43303	1012 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RAMP2	O60895	175 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ADRB3	P13945	408 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	HTR7	P34969	479 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ACADVL	P49748	655 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	NEK3	P51956	506 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	YBEY	P58557	167 aa	Predicted RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RPS21	P63220	83 aa	Known RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	ILK	Q13418	452 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	POLD3	Q15054	466 aa	Predicted RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	INO80D	Q53TQ3	878 aa	Predicted RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RWDD4	Q6NW29	188 aa	Known RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	TMPRSS12	Q86WS5	348 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	DCP2	Q8IU60	420 aa	Known RBP	13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	SLC25A45	Q8N413	288 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	EID2	Q8N6I1	236 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	AOPEP	Q8N6M6	819 aa		13.34	□□□□□ -0.27
SEMA4D-223	ENST00000540475	RTL3	Q8N8U3	475 aa	Known RBP	13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms