RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 C6orf106Q9H6K1 298 aaPredicted RBP20.21■□□□□ 0.83
CPSF1-209ENST00000532725 VPS45Q9NRW7 570 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 KLHL11Q9NVR0 708 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 IL36AQ9UHA7 158 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 HYOU1Q9Y4L1 999 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 CFAP54Q96N23 3096 aa20.21■□□□□ 0.83
CPSF1-209ENST00000532725 BTNL10A8MVZ5 291 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 GOLGA6L6A8MZA4 724 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 C10orf142B7Z368 130 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 C1QTNF3-AMACRE9PGA6 284 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 DFFAO00273 331 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 PLK4O00444 970 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 PJA2O43164 708 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 SEMA4FO95754 770 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 GSRP00390 522 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 PRNPP04156 253 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 CCNHP51946 323 aaPredicted RBP20.2■□□□□ 0.82
CPSF1-209ENST00000532725 GSDMDP57764 484 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 MYLK3Q32MK0 819 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 PEAR1Q5VY43 1037 aaPredicted RBP20.2■□□□□ 0.82
CPSF1-209ENST00000532725 OR2AP1Q8NGE2 309 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 ZNF670Q9BS34 389 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 CALN1Q9BXU9 219 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 TM6SF2Q9BZW4 377 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 SMOC1Q9H4F8 434 aa20.2■□□□□ 0.82
CPSF1-209ENST00000532725 UBA2Q9UBT2 640 aaPredicted RBP20.2■□□□□ 0.82
CPSF1-209ENST00000532725 IPO11Q9UI26 975 aaKnown RBP20.2■□□□□ 0.82
CPSF1-209ENST00000532725 CEP192Q8TEP8 1941 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 RALGAPA1Q6GYQ0 2036 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 C3orf70A6NLC5 250 aaPredicted RBP20.19■□□□□ 0.82
CPSF1-209ENST00000532725 LEFTY1O75610 366 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 POP4O95707 220 aaKnown RBP20.19■□□□□ 0.82
CPSF1-209ENST00000532725 MAOBP27338 520 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 VAV2P52735 878 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 SNRPD1P62314 119 aaKnown RBP20.19■□□□□ 0.82
CPSF1-209ENST00000532725 IL10RBQ08334 325 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 CNTN1Q12860 1018 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 POM121L1PQ3SYA9 428 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 SYCP2LQ5T4T6 812 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 DCAF12L1Q5VU92 463 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 RHOT1Q8IXI2 618 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 PQLC3Q8N755 202 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 TPCN2Q8NHX9 752 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 ARRDC3Q96B67 414 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 GOLPH3Q9H4A6 298 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 GRPEL1Q9HAV7 217 aa20.19■□□□□ 0.82
CPSF1-209ENST00000532725 SLC7A4O43246 635 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 GKP32189 559 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 HOXD12P35452 270 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 DPP6P42658 865 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 PAFAH1B3Q15102 231 aaKnown RBP20.18■□□□□ 0.82
CPSF1-209ENST00000532725 SF3A2Q15428 464 aaKnown RBP20.18■□□□□ 0.82
CPSF1-209ENST00000532725 WDR45BQ5MNZ6 344 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 ZFYVE27Q5T4F4 411 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 ATXN7L2Q5T6C5 722 aaPredicted RBP20.18■□□□□ 0.82
CPSF1-209ENST00000532725 AGBL4Q5VU57 503 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 NCBP2-AS2Q69YL0 99 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 PRR23CQ6ZRP0 262 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 VSIG1Q86XK7 387 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 OR14C36Q8NHC7 312 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 GRIN3AQ8TCU5 1115 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 LRIG1Q96JA1 1093 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 CALR3Q96L12 384 aaKnown RBP20.18■□□□□ 0.82
CPSF1-209ENST00000532725 RNF157Q96PX1 679 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 LHX3Q9UBR4 397 aa20.18■□□□□ 0.82
CPSF1-209ENST00000532725 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.18■□□□□ 0.82
CPSF1-209ENST00000532725 LRRD1A4D1F6 860 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 ZNF487B1APH4 448 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 PATE3B3GLJ2 98 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 KPNA3O00505 521 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-209ENST00000532725 SPOPO43791 374 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 MAFKO60675 156 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 PALMO75781 387 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 PEX11BO96011 259 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 SERPINB6P35237 376 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 ADPRHP54922 357 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 RHOAP61586 193 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 PIP5KL1Q5T9C9 394 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 C11orf63Q6NUN7 778 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 NCEH1Q6PIU2 408 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 RYBPQ8N488 228 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-209ENST00000532725 OR2T34Q8NGX1 318 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 OR6K2Q8NGY2 324 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 C1orf216Q8TAB5 229 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 BIRC7Q96CA5 298 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 HDAC8Q9BY41 377 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 KDM4CQ9H3R0 1056 aa20.17■□□□□ 0.82
CPSF1-209ENST00000532725 DDX56Q9NY93 547 aaKnown RBP20.17■□□□□ 0.82
CPSF1-209ENST00000532725 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-209ENST00000532725 TNRC6BQ9UPQ9 1833 aaKnown RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 LRRC72A6NJI9 287 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 KRIT1O00522 736 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 PLRG1O43660 514 aaKnown RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 FOXD2O60548 495 aaPredicted RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 IGHV4-34P06331 123 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 TNNT1P13805 278 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 TAS2R38P59533 333 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 IRX4P78413 519 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 RFTN1Q14699 578 aaPredicted RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 KIAA0895LQ68EN5 471 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms