RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 FAM72DQ6L9T8 149 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 RWDD4Q6NW29 188 aaKnown RBP16.09■□□□□ 0.17
CPSF1-205ENST00000531042 NLRP14Q86W24 1093 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 FAM72BQ86X60 149 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 CENPIQ92674 756 aaPredicted RBP16.09■□□□□ 0.17
CPSF1-205ENST00000531042 ARHGEF2Q92974 986 aaKnown RBP16.09■□□□□ 0.17
CPSF1-205ENST00000531042 PCDHB18PQ96TA0 734 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 MAGEB5Q9BZ81 275 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 FZD3Q9NPG1 666 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 NDFIP2Q9NV92 336 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 KLHL11Q9NVR0 708 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 TMEM248Q9NWD8 314 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 FCF1Q9Y324 198 aaKnown RBP16.09■□□□□ 0.17
CPSF1-205ENST00000531042 ACTL7AQ9Y615 435 aa16.09■□□□□ 0.17
CPSF1-205ENST00000531042 APC2O95996 2303 aa16.08■□□□□ 0.17
CPSF1-205ENST00000531042 ACACAQ13085 2346 aa16.08■□□□□ 0.17
CPSF1-205ENST00000531042 KRT3P12035 628 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 ADRB3P13945 408 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 JUPP14923 745 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 RHOQP17081 205 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 CKMT2P17540 419 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 L1CAMP32004 1257 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 HNF1BP35680 557 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 ETFBP38117 255 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 MAPKAPK2P49137 400 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 CCNHP51946 323 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-205ENST00000531042 COPB1P53618 953 aaKnown RBP16.08■□□□□ 0.16
CPSF1-205ENST00000531042 HDAC4P56524 1084 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 GSCP56915 257 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-205ENST00000531042 ILKQ13418 452 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 SYCP1Q15431 976 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 PROX2Q3B8N5 592 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 SEL1L3Q68CR1 1132 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 FBXL19Q6PCT2 694 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 GCNT7Q6ZNI0 430 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 ABI3BPQ7Z7G0 1075 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 PLPP6Q8IY26 295 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 SLC25A45Q8N413 288 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 CCDC185Q8N715 623 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 OR13H1Q8NG92 308 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 ISG20Q96AZ6 181 aaKnown RBP16.08■□□□□ 0.16
CPSF1-205ENST00000531042 ADAM22Q9P0K1 906 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 HECAQ9UBI9 543 aaPredicted RBP16.08■□□□□ 0.16
CPSF1-205ENST00000531042 LIMA1Q9UHB6 759 aaKnown RBP16.08■□□□□ 0.16
CPSF1-205ENST00000531042 DNAI1Q9UI46 699 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 NEU3Q9UQ49 428 aa16.08■□□□□ 0.16
CPSF1-205ENST00000531042 TRPM6Q9BX84 2022 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 TRIM38O00635 465 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 SIGLEC6O43699 453 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 LRIG2O94898 1065 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 PLEKP08567 350 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 HOXB3P14651 431 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 DGKAP23743 735 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 ACP1P24666 158 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 RFC1P35251 1148 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 NSFP46459 744 aaKnown RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 CLDN2P57739 230 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 RPS21P63220 83 aaKnown RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 ZNF211Q13398 564 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 CLEC16AQ2KHT3 1053 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 COL28A1Q2UY09 1125 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 HES3Q5TGS1 186 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 KIAA1161Q6NSJ0 714 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 PHF13Q86YI8 300 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-205ENST00000531042 NEK11Q8NG66 645 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 FAM174AQ8TBP5 190 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 FAM172AQ8WUF8 416 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 TBC1D31Q96DN5 1066 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 FEM1CQ96JP0 617 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 SELENOOQ9BVL4 669 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 CALN1Q9BXU9 219 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 SLC17A9Q9BYT1 436 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 TM6SF2Q9BZW4 377 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 MAGEH1Q9H213 219 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 ZDHHC6Q9H6R6 413 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 FADS3Q9Y5Q0 445 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 HS3ST3A1Q9Y663 406 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 MYLKQ15746 1914 aa16.07■□□□□ 0.16
CPSF1-205ENST00000531042 CACNA1GO43497 2377 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 LGALS16A8MUM7 142 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 AP1G1O43747 822 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 CALB1P05937 261 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 GPD1P21695 349 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 GEMIN4P57678 1058 aaKnown RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 TARDBPQ13148 414 aaKnown RBP eCLIP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 MAPK8IP2Q13387 824 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 FGL2Q14314 439 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 WDR59Q6PJI9 974 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 SASS6Q6UVJ0 657 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 Q6ZSR6 202 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 PARS2Q7L3T8 475 aaKnown RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 DCP2Q8IU60 420 aaKnown RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 SLC22A18ASQ8N1D0 253 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 C3orf20Q8ND61 904 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 ANKRD20A12PQ8NF67 263 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 HNRNPLLQ8WVV9 542 aaKnown RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 NTAN1Q96AB6 310 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 BMFQ96LC9 184 aa16.06■□□□□ 0.16
CPSF1-205ENST00000531042 PCMTD1Q96MG8 357 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-205ENST00000531042 SCUBE2Q9NQ36 999 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms