RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR2W6PQ8NHA6 318 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 SH3RF2Q8TEC5 729 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 LRRC3BQ96PB8 259 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 KIF9Q9HAQ2 790 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 TMBIM4Q9HC24 238 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 TTC28Q96AY4 2481 aa21.56■■□□□ 1.04
VPS28-212ENST00000530836 H0Y626 953 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 J3KR12 359 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 TRDMT1O14717 391 aaKnown RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 KDELR3O43731 214 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 TBL1XO60907 577 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 SHBGP04278 402 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 MMP13P45452 471 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 GEMP55040 296 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 TDGQ13569 410 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 SYCP2LQ5T4T6 812 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 NAPEPLDQ6IQ20 393 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 VITQ6UXI7 678 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 ZNF534Q76KX8 674 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 USP33Q8TEY7 942 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 NAT9Q9BTE0 207 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 TBC1D14Q9P2M4 693 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 HMGB1P1B2RPK0 211 aaPredicted RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 RNF40O75150 1001 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 LUC7L3O95232 432 aaKnown RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 CYBBP04839 570 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 ELK3P41970 407 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 SGSHP51688 502 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 LBRQ14739 615 aaKnown RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 IL31Q6EBC2 164 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 ANKMY2Q8IV38 441 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 BBS7Q8IWZ6 715 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 GORASP1Q9BQQ3 440 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 ACE2Q9BYF1 805 aaPredicted RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 STMN4Q9H169 189 aaPredicted RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 SLC25A51Q9H1U9 297 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 VPS37BQ9H9H4 285 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 FETUBQ9UGM5 382 aa21.55■■□□□ 1.04
VPS28-212ENST00000530836 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.55■■□□□ 1.04
VPS28-212ENST00000530836 NYNRINQ9P2P1 1898 aaKnown RBP21.54■■□□□ 1.04
VPS28-212ENST00000530836 SDR42E2A6NKP2 422 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 RASGRF2O14827 1237 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 HLA-DQB2P05538 268 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 PSMC3P17980 439 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 ACVRL1P37023 503 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 AGBL2Q5U5Z8 902 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 CXorf57Q6NSI4 855 aaKnown RBP21.54■■□□□ 1.04
VPS28-212ENST00000530836 C3orf62Q6ZUJ4 267 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 BPIFB1Q8TDL5 484 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 OTUB2Q96DC9 234 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 PGM2Q96G03 612 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 PDFQ9HBH1 243 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 VPS45Q9NRW7 570 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 SORCS3Q9UPU3 1222 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 SHROOM3Q8TF72 1996 aa21.54■■□□□ 1.04
VPS28-212ENST00000530836 NCOR1O75376 2440 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 A0A0D9SEW6 157 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 AVILO75366 819 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 CPP00450 1065 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 HOXD9P28356 352 aaPredicted RBP21.53■■□□□ 1.04
VPS28-212ENST00000530836 FCHO2Q0JRZ9 810 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 MPP3Q13368 585 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 CDH18Q13634 790 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 RIBC1Q8N443 379 aaPredicted RBP21.53■■□□□ 1.04
VPS28-212ENST00000530836 CARNMT1Q8N4J0 409 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 ZNF557Q8N988 423 aaPredicted RBP21.53■■□□□ 1.04
VPS28-212ENST00000530836 DDI1Q8WTU0 396 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 ATP6V1G3Q96LB4 118 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 SIGLEC10Q96LC7 697 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 EBNA1BP2Q99848 306 aaKnown RBP21.53■■□□□ 1.04
VPS28-212ENST00000530836 MLPHQ9BV36 600 aaPredicted RBP21.53■■□□□ 1.04
VPS28-212ENST00000530836 TRMT61BQ9BVS5 477 aaKnown RBP21.53■■□□□ 1.04
VPS28-212ENST00000530836 MUC3BQ9H195 1237 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 ATP13A1Q9HD20 1204 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 MUTYHQ9UIF7 546 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 CHMP2BQ9UQN3 213 aa21.53■■□□□ 1.04
VPS28-212ENST00000530836 CHD5Q8TDI0 1954 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 F5H423 210 aaPredicted RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 SLC10A7Q0GE19 358 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 ZNF77Q15935 545 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 HP1BP3Q5SSJ5 553 aaPredicted RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 FAM182AQ5T1J6 154 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 RNF219Q5W0B1 726 aaPredicted RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 RNF43Q68DV7 783 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 MFN1Q8IWA4 741 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 OR7D4Q8NG98 312 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 UHMK1Q8TAS1 419 aaKnown RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 RIN3Q8TB24 985 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 WDR83Q9BRX9 315 aaKnown RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 SPON2Q9BUD6 331 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 CASS4Q9NQ75 786 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 BFARQ9NZS9 450 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 ZC3H7BQ9UGR2 993 aaKnown RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 SEPT3Q9UH03 358 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 TTLL3Q9Y4R7 772 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 MYO18AQ92614 2054 aaKnown RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 BDP1A6H8Y1 2624 aa21.52■■□□□ 1.04
VPS28-212ENST00000530836 HELZP42694 1942 aaKnown RBP21.52■■□□□ 1.04
VPS28-212ENST00000530836 SLC9A3R1O14745 358 aaPredicted RBP21.51■■□□□ 1.03
VPS28-212ENST00000530836 BANF1O75531 89 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms