RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 NEK3P51956 506 aa24.05■■□□□ 1.44
CPSF1-202ENST00000527827 PCBP4P57723 403 aaKnown RBP24.05■■□□□ 1.44
CPSF1-202ENST00000527827 SLC25A52Q3SY17 297 aa24.05■■□□□ 1.44
CPSF1-202ENST00000527827 KYAT3Q6YP21 454 aaKnown RBP24.05■■□□□ 1.44
CPSF1-202ENST00000527827 FAM71AQ8IYT1 594 aa24.05■■□□□ 1.44
CPSF1-202ENST00000527827 NAF1Q96HR8 494 aaKnown RBP24.05■■□□□ 1.44
CPSF1-202ENST00000527827 USP29Q9HBJ7 922 aa24.05■■□□□ 1.44
CPSF1-202ENST00000527827 FADS3Q9Y5Q0 445 aa24.05■■□□□ 1.44
CPSF1-202ENST00000527827 ZNF462Q96JM2 2506 aa24.05■■□□□ 1.44
CPSF1-202ENST00000527827 ATMQ13315 3056 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 ILVBLA1L0T0 632 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 USP12O75317 370 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 CSO75390 466 aaKnown RBP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 PAK4O96013 591 aaPredicted RBP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 ITGB7P26010 798 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 CDH5P33151 784 aaPredicted RBP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 SCNN1AP37088 669 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 GABRB2P47870 512 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 SERPINH1P50454 418 aaKnown RBP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 HNRNPKP61978 463 aaKnown RBP eCLIP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 RPS21P63220 83 aaKnown RBP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 GABREP78334 506 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 MAPK8IP2Q13387 824 aaPredicted RBP24.04■■□□□ 1.44
CPSF1-202ENST00000527827 KIAA1161Q6NSJ0 714 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 TRNP1Q6NT89 227 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 DPY19L2P1Q6NXN4 242 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 SPON2Q9BUD6 331 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 DUSP23Q9BVJ7 150 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 CEP44Q9C0F1 390 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 OSBPL2Q9H1P3 480 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 PAXBP1Q9Y5B6 917 aa24.04■■□□□ 1.44
CPSF1-202ENST00000527827 LZTS3O60299 673 aaPredicted RBP24.03■■□□□ 1.44
CPSF1-202ENST00000527827 SRGAP2O75044 1071 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 CSF2P04141 144 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 NME1P15531 152 aaKnown RBP24.03■■□□□ 1.44
CPSF1-202ENST00000527827 L1CAMP32004 1257 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 FLT3P36888 993 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 LSSP48449 732 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 DUSP3P51452 185 aaPredicted RBP24.03■■□□□ 1.44
CPSF1-202ENST00000527827 ARF5P84085 180 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 ACBD5Q5T8D3 534 aaPredicted RBP24.03■■□□□ 1.44
CPSF1-202ENST00000527827 RETSATQ6NUM9 610 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 ZNF783Q6ZMS7 281 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 BNIPLQ7Z465 357 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 XYLT1Q86Y38 959 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 LSMEM2Q8N112 164 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 PCDH20Q8N6Y1 951 aaKnown RBP24.03■■□□□ 1.44
CPSF1-202ENST00000527827 TMEM35BQ8NCS4 154 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 ZNF548Q8NEK5 533 aaPredicted RBP24.03■■□□□ 1.44
CPSF1-202ENST00000527827 IFI44Q8TCB0 444 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 C18orf8Q96DM3 657 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 FEM1CQ96JP0 617 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 HEPHQ9BQS7 1158 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 POLR1BQ9H9Y6 1135 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 CHD5Q8TDI0 1954 aa24.03■■□□□ 1.44
CPSF1-202ENST00000527827 SPTY2D1-AS1A0A0U1RR47 76 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 FAM170AA1A519 330 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 AP1G1O43747 822 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 CD160O95971 181 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 PLA2G2AP14555 144 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 CCNHP51946 323 aaPredicted RBP24.02■■□□□ 1.44
CPSF1-202ENST00000527827 SLC20A2Q08357 652 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 CARD16Q5EG05 197 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 TPRG1LQ5T0D9 272 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 FAM102AQ5T9C2 384 aaPredicted RBP24.02■■□□□ 1.44
CPSF1-202ENST00000527827 PARS2Q7L3T8 475 aaKnown RBP24.02■■□□□ 1.44
CPSF1-202ENST00000527827 HAPLN3Q96S86 360 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 KLF6Q99612 283 aaPredicted RBP24.02■■□□□ 1.44
CPSF1-202ENST00000527827 ATP13A1Q9HD20 1204 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 ASCL3Q9NQ33 180 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 KIAA1468Q9P260 1216 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 KLF15Q9UIH9 416 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 FCF1Q9Y324 198 aaKnown RBP24.02■■□□□ 1.44
CPSF1-202ENST00000527827 ACTL7AQ9Y615 435 aa24.02■■□□□ 1.44
CPSF1-202ENST00000527827 ASH1LQ9NR48 2969 aaKnown RBP24.02■■□□□ 1.44
CPSF1-202ENST00000527827 RP1P56715 2156 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 MTIF2P46199 727 aaKnown RBP24.01■■□□□ 1.43
CPSF1-202ENST00000527827 DNA2P51530 1060 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 BPIFB4P59827 614 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 ERVPABLB-1P60509 514 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 GNA12Q03113 381 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 ZCCHC8Q6NZY4 707 aaKnown RBP24.01■■□□□ 1.43
CPSF1-202ENST00000527827 PARGQ86W56 976 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 MAPK15Q8TD08 544 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 C1QTNF2Q9BXJ5 285 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 ZYG11BQ9C0D3 744 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 ABCG4Q9H172 646 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 EVA1BQ9NVM1 165 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 TMEM51Q9NW97 253 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 CSNK1G3Q9Y6M4 447 aa24.01■■□□□ 1.43
CPSF1-202ENST00000527827 TGM2P21980 687 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 RABIFP47224 123 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 CFHR1Q03591 330 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 BECN1Q14457 450 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 C2CD6Q53TS8 623 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 ZNF605Q86T29 641 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 CFAP57Q96MR6 1250 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 LENG8Q96PV6 779 aaPredicted RBP24■■□□□ 1.43
CPSF1-202ENST00000527827 CPNE5Q9HCH3 593 aa24■■□□□ 1.43
CPSF1-202ENST00000527827 TMEM59LQ9UK28 342 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms