RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 TMEM79Q9BSE2 394 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 HDHD5Q9BXW7 423 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 TWSG1Q9GZX9 223 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 MOV10Q9HCE1 1003 aaKnown RBP4.22□□□□□ -1.73
CD44-219ENST00000525685 THAP1Q9NVV9 213 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 TMEM45AQ9NWC5 275 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 KLQ9UEF7 1012 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 FBXO4Q9UKT5 387 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 RCE1Q9Y256 329 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 DNAJC16Q9Y2G8 782 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 A0A1W2PP64 1363 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 ARHGEF10O15013 1369 aa4.22□□□□□ -1.73
CD44-219ENST00000525685 SLIT3O75094 1523 aa4.21□□□□□ -1.73
CD44-219ENST00000525685 NRAPQ86VF7 1730 aa4.21□□□□□ -1.73
CD44-219ENST00000525685 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.21□□□□□ -1.73
CD44-219ENST00000525685 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 SAC3D1A6NKF1 404 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 C2CD4BA6NLJ0 364 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 F8W810 466 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 KLK10O43240 276 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 STRNO43815 780 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 TSPAN3O60637 253 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 HLA-DQA2P01906 255 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 PYGLP06737 847 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 LYL1P12980 280 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 ACP5P13686 325 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 PRPH2P23942 346 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 PRKCHP24723 683 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 CHRNA5P30532 468 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 NR4A2P43354 598 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 PLCD1P51178 756 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 CYP2J2P51589 502 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 ADPRHP54922 357 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 TMF1P82094 1093 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 UBE3AQ05086 875 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 THOC5Q13769 683 aaKnown RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 RABEP1Q15276 862 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 DLGAP5Q15398 846 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 GXYLT1Q4G148 440 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 SLC30A9Q6PML9 568 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 IGFN1Q86VF2 1251 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 ANKRD13BQ86YJ7 626 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 HERC6Q8IVU3 1022 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 ARL14EPQ8N8R7 260 aaPredicted RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 BCAS4Q8TDM0 211 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 NOC3LQ8WTT2 800 aaKnown RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 ZFPM2Q8WW38 1151 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 USP13Q92995 863 aaPredicted RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 P2RY11Q96G91 374 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 MAELQ96JY0 434 aaKnown RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 TUBB6Q9BUF5 446 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 IFT27Q9BW83 186 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 CADM1Q9BY67 442 aaKnown RBP4.21□□□□□ -1.74
CD44-219ENST00000525685 AAMDCQ9H7C9 122 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 TMEM184CQ9NVA4 438 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 UTS2RQ9UKP6 389 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 DHDHQ9UQ10 334 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 NINLQ9Y2I6 1382 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 KIF20BQ96Q89 1820 aa4.21□□□□□ -1.74
CD44-219ENST00000525685 COL14A1Q05707 1796 aaKnown RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 BRD4O60885 1362 aaPredicted RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 ANKRD36BQ8N2N9 1353 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 TCRBV7S3A2A0A539 114 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 CXorf65A6NEN9 183 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 RHODO00212 210 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 PRPF4O43172 522 aaKnown RBP eCLIP4.2□□□□□ -1.74
CD44-219ENST00000525685 KCNAB3O43448 404 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 CBX6O95503 412 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 POLBP06746 335 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 CSF1P09603 554 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 IFIT1P09914 478 aaKnown RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 CYP19A1P11511 503 aaPredicted RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 KLRC2P26717 231 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 SKIV2L2P42285 1042 aaKnown RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 ARHGAP8P85298 464 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 GAD2Q05329 585 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 PMPCAQ10713 525 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 TRPC3Q13507 836 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 LAMB3Q13751 1172 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 EFR3AQ14156 821 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 CBWD5Q5RIA9 395 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 PXDC1Q5TGL8 231 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 MTFR2Q6P444 385 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 ZNF474Q6S9Z5 364 aaPredicted RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 RNF144BQ7Z419 303 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 CCDC25Q86WR0 208 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 USP38Q8NB14 1042 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 OR52N4Q8NGI2 321 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 PIGOQ8TEQ8 1089 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 NCSTNQ92542 709 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 IP6K1Q92551 441 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 ATP2A3Q93084 1043 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 COQ8BQ96D53 544 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 ZNF419Q96HQ0 510 aaPredicted RBP4.2□□□□□ -1.74
CD44-219ENST00000525685 SIGLEC11Q96RL6 698 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 NPAS1Q99742 590 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.2□□□□□ -1.74
CD44-219ENST00000525685 RASSF1Q9NS23 344 aa4.2□□□□□ -1.74
CD44-219ENST00000525685 TRNAU1APQ9NX07 287 aaKnown RBP4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms