RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PRSS22Q9GZN4 317 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 SPAG4Q9NPE6 437 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 SNTG1Q9NSN8 517 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 RNF146Q9NTX7 359 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 BLOC1S4Q9NUP1 217 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 TMEM184CQ9NVA4 438 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 C11orf21Q9P2W6 132 aa4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 LAS1LQ9Y4W2 734 aaKnown RBP4.33□□□□□ -1.72
HMGB1P28-201ENST00000507778 A0A1W2PQM1 296 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 C17orf102A2RUQ5 167 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PGPEP1LA6NFU8 196 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TLR2O60603 784 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZBED4O75132 1171 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TACC1O75410 805 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 CLEC3BP05452 202 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 CELA2AP08217 269 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 KELP23276 732 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PSMA4P25789 261 aaKnown RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 HOXD9P28356 352 aaPredicted RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 POLD2P49005 469 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 CTCFP49711 727 aaPredicted RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 EIF3BP55884 814 aaKnown RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 DCTN2Q13561 401 aaKnown RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TBCEQ15813 527 aaPredicted RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 SMTNL2Q2TAL5 461 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PIK3CD-AS1Q5SR53 167 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 MZT2BQ6NZ67 158 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 CLEC4GQ6UXB4 293 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 KDELC2Q7Z4H8 507 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TRIM74Q86UV6 250 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TRIM73Q86UV7 250 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 ANKRD13BQ86YJ7 626 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 ANKRD52Q8NB46 1076 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PRSS3P2Q8NHM4 247 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 ETNPPLQ8TBG4 499 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TMEM170AQ8WVE7 144 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 EME1Q96AY2 570 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 KLHL15Q96M94 604 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 RANBP17Q9H2T7 1088 aaKnown RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PLEKHA5Q9HAU0 1116 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PNRC2Q9NPJ4 139 aaKnown RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PCDHB16Q9NRJ7 776 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 THSD1Q9NS62 852 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 KRT84Q9NSB2 600 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 TBC1D22BQ9NU19 505 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 KIAA1456Q9P272 454 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 PTGFRNQ9P2B2 879 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 HSPB7Q9UBY9 170 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 FBXO9Q9UK97 447 aaPredicted RBP4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 RAP2CQ9Y3L5 183 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC4A4Q9Y6R1 1079 aa4.32□□□□□ -1.72
HMGB1P28-201ENST00000507778 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 PI4KAP2A4QPH2 592 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 DDTLA6NHG4 134 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 E5RJQ4 531 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 ADAM10O14672 748 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 TLX3O43711 291 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC25A17O43808 307 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SPARCP09486 303 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 PRR35P0CG20 571 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 UNGP13051 313 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC2A4P14672 509 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 CD38P28907 300 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 NAP1L1P55209 391 aaKnown RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SETQ01105 290 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC18A2Q05940 514 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 PKP1Q13835 747 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 TAF11Q15544 211 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SMN1Q16637 294 aaKnown RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 C6orf10Q5SRN2 563 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SERTAD4-AS1Q5TG53 156 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 HMBOX1Q6NT76 420 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC2A7Q6PXP3 512 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 NEK10Q6ZWH5 1172 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 GPAT4Q86UL3 456 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 TMC8Q8IU68 726 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 DNAJC10Q8IXB1 793 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZDHHC23Q8IYP9 409 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 CNTROBQ8N137 903 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 NGEFQ8N5V2 710 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 OR4N2Q8NGD1 307 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 ATOH1Q92858 354 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 CRAMP1Q96RY5 1269 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 CHCHD6Q9BRQ6 235 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 HEMGNQ9BXL5 484 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 NRIP3Q9NQ35 241 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 DIAPH3Q9NSV4 1193 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 C20orf141Q9NUB4 165 aa4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 PLEKHB1Q9UF11 243 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 FBXO2Q9UK22 296 aaPredicted RBP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.31□□□□□ -1.72
HMGB1P28-201ENST00000507778 ADGRF5Q8IZF2 1346 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 A0A096LPK6 155 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 NPIPB15A6NHN6 443 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 TTC36A6NLP5 189 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 CNOT3O75175 753 aaKnown RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 PPFIA2O75334 1257 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 RNASEH2AO75792 299 aaKnown RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SEC14L2O76054 403 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 CCNDBP1O95273 360 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms