RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 ZDHHC4Q9NPG8 344 aa10.24□□□□□ -0.77
NUP54-203ENST00000504173 THAP10Q9P2Z0 257 aaPredicted RBP10.24□□□□□ -0.77
NUP54-203ENST00000504173 VPS51Q9UID3 782 aa10.24□□□□□ -0.77
NUP54-203ENST00000504173 PLA2G4CQ9UP65 541 aa10.24□□□□□ -0.77
NUP54-203ENST00000504173 ERVW-1Q9UQF0 538 aa10.24□□□□□ -0.77
NUP54-203ENST00000504173 TK2O00142 265 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 NPC1O15118 1278 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 KDELR3O43731 214 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 MAP3K6O95382 1288 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 KLF8O95600 359 aaPredicted RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 ATP1A1P05023 1023 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 SRPRAP08240 638 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 TGM2P21980 687 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 NNMTP40261 264 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 STK19P49842 368 aaPredicted RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 ARF5P84085 180 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 GBE1Q04446 702 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 SRSF5Q13243 272 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 SERINC3Q13530 473 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 PTPRNQ16849 979 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 SDE2Q6IQ49 451 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 AADACL2Q6P093 401 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 NPNTQ6UXI9 565 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 SERPINA13PQ6UXR4 307 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 TRMT11Q7Z4G4 463 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 TP53INP2Q8IXH6 220 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 ATPAF2Q8N5M1 289 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 CCDC33Q8N5R6 958 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 ALLCQ8N6M5 410 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 PLD5Q8N7P1 536 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 TXNDC5Q8NBS9 432 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 RPL10LQ96L21 214 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 CARD9Q9H257 536 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.23□□□□□ -0.77
NUP54-203ENST00000504173 HCN2Q9UL51 889 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 EFR3BQ9Y2G0 817 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 PCDHGA5Q9Y5G8 931 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 HEY1Q9Y5J3 304 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 PIEZO2Q9H5I5 2752 aa10.23□□□□□ -0.77
NUP54-203ENST00000504173 ZSCAN5CA6NGD5 496 aaPredicted RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 CHURC1-FNTBB4DL54 471 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ATG13O75143 517 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ZMPSTE24O75844 475 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 C1QL1O75973 258 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 TJP3O95049 919 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 CHRM1P11229 460 aaPredicted RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 HNRNPLP14866 589 aaKnown RBP eCLIP10.22□□□□□ -0.77
NUP54-203ENST00000504173 MX2P20592 715 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 NTSR1P30989 418 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 HOXA6P31267 233 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 IL12RB1P42701 662 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 WASP42768 502 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 CXCL12P48061 93 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 FNTBP49356 437 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 GEMIN4P57678 1058 aaKnown RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 GALNT2Q10471 571 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ACCSLQ4AC99 568 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 HSF5Q4G112 596 aaPredicted RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 EOGTQ5NDL2 527 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 PKN3Q6P5Z2 889 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 LINGO4Q6UY18 593 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 LEKR1Q6ZMV7 388 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ARHGAP36Q6ZRI8 547 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 BBS12Q6ZW61 710 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 BZW1Q7L1Q6 419 aaKnown RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 IL17RCQ8NAC3 791 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ATP11CQ8NB49 1132 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 KDM1BQ8NB78 822 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 P3H4Q92791 437 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 HAUS1Q96CS2 278 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 MRGPRX3Q96LB0 322 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 WDR24Q96S15 920 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ACOX2Q99424 681 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 NAPGQ99747 312 aaPredicted RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 SCUBE2Q9NQ36 999 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 DTLQ9NZJ0 730 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 UBA2Q9UBT2 640 aaPredicted RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 IPO11Q9UI26 975 aaKnown RBP10.22□□□□□ -0.77
NUP54-203ENST00000504173 SLC8A2Q9UPR5 921 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 RAD54BQ9Y620 910 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 STON1Q9Y6Q2 735 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 CHD5Q8TDI0 1954 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 NUP205Q92621 2012 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 ATG2BQ96BY7 2078 aa10.22□□□□□ -0.77
NUP54-203ENST00000504173 TEX15Q9BXT5 2789 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 MYO18AQ92614 2054 aaKnown RBP10.21□□□□□ -0.77
NUP54-203ENST00000504173 CTAGE9A4FU28 777 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 J3KR12 359 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 APOC4-APOC2K7ER74 178 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 K7ESF4 209 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 PPP1R12AO14974 1030 aaPredicted RBP10.21□□□□□ -0.77
NUP54-203ENST00000504173 HYAL3O43820 417 aaPredicted RBP10.21□□□□□ -0.77
NUP54-203ENST00000504173 CEP104O60308 925 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 SYNCRIPO60506 623 aaKnown RBP10.21□□□□□ -0.77
NUP54-203ENST00000504173 PRAMEF11O60813 436 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 MT-CO1P00395 513 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 APOC2P02655 101 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 SRCP12931 536 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 HLA-EP13747 358 aa10.21□□□□□ -0.77
NUP54-203ENST00000504173 HOXB2P14652 356 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms