RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 FAM35AQ86V20 835 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DEFB118Q96PH6 123 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GPR22Q99680 433 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 COLEC11Q9BWP8 271 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 IL22Q9GZX6 179 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 CNGB3Q9NQW8 809 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 DDIT4Q9NX09 232 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 UBP1Q9NZI7 540 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MYBPHLA2RUH7 354 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HHLA1C9JL84 531 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SEPT4O43236 478 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 MTSS1O43312 755 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 H2AFYO75367 372 aaKnown RBP16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 LRRC36Q1X8D7 754 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ITPRIPL1Q6GPH6 555 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ZYG11AQ6WRX3 759 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 KBTBD6Q86V97 674 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 HIPK4Q8NE63 616 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SENP8Q96LD8 212 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 ACE2Q9BYF1 805 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 RNF208Q9H0X6 261 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 WDR55Q9H6Y2 383 aaPredicted RBP16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 TCF7L2Q9NQB0 619 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SLC39A10Q9ULF5 831 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 SSX2IPQ9Y2D8 614 aa16.34■□□□□ 0.21
MSH5-SAPCD1-208ENST00000498473 GOLGA8QA0A0J9YX86 632 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GOLGA8OA6NCC3 632 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GOLGA8NF8WBI6 632 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TK2O00142 265 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PDLIM1O00151 329 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GRID2O43424 1007 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 JCHAINP01591 159 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PEX2P28328 305 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GABRB3P28472 473 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARHGAP22Q7Z5H3 698 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZC3HC1Q86WB0 502 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 KLHDC8BQ8IXV7 354 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CNTD1Q8N815 330 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GDPD5Q8WTR4 605 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PCED1BQ96HM7 432 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PLEKHG4BQ96PX9 1271 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 VAT1Q99536 393 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 KLHL4Q9C0H6 718 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 DRC3Q9H069 523 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ILKAPQ9H0C8 392 aaPredicted RBP16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RAP2CQ9Y3L5 183 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 COL4A4P53420 1690 aaPredicted RBP16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MEIS3P2A8K0S8 358 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RAG1P15918 1043 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PIK3R1P27986 724 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CXCR3P49682 368 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 FSCN1Q16658 493 aaKnown RBP16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ANO4Q32M45 955 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MAP3K21Q5TCX8 1036 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ACAD11Q709F0 780 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 OTOP3Q7RTS5 596 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GALNT15Q8N3T1 639 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SLAIN1Q8ND83 568 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 EDEM1Q92611 657 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CNDP1Q96KN2 507 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 EPAS1Q99814 870 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 KIFC1Q9BW19 673 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 OR12D3Q9UGF7 316 aa16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TIMM13Q9Y5L4 95 aaPredicted RBP16.33■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 MYLKQ15746 1914 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CCDC78A2IDD5 438 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TARM1B6A8C7 271 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 HAS3O00219 553 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CASQ2O14958 399 aaPredicted RBP16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PHGDHO43175 533 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CACNG3O60359 315 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LRIG2O94898 1065 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SERPINB5P36952 375 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 GRIA4P48058 902 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CRYBB1P53674 252 aaPredicted RBP16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 AQP4P55087 323 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CDH17Q12864 832 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LSM12Q3MHD2 195 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 LIPMQ5VYY2 423 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PM20D1Q6GTS8 502 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RDH11Q8TC12 318 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PXYLP1Q8TE99 480 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 CELF6Q96J87 481 aaKnown RBP16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TKTL2Q9H0I9 626 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZNF385DQ9H6B1 395 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 TASP1Q9H6P5 420 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 HMX1Q9NP08 348 aaPredicted RBP16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ANKRD6Q9Y2G4 727 aa16.32■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 HDAC3O15379 428 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ZSCAN9O15535 394 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 APOA4P06727 396 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 SLC35E2BP0CK96 405 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PIM1P11309 404 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 UQCRBP14927 111 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 HADHAP40939 763 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PSEN2P49810 448 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 RPL14P50914 215 aaKnown RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARL13BQ3SXY8 428 aa16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 ARL13AQ5H913 290 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-208ENST00000498473 PPM1LQ5SGD2 360 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms