RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 EFL1Q7Z2Z2 1120 aaKnown RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 PTAR1Q7Z6K3 402 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 PARGQ86W56 976 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ARHGEF19Q8IW93 802 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ARL14Q8N4G2 192 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 WDR36Q8NI36 951 aaKnown RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 TBATAQ96M53 351 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 KREMEN1Q96MU8 473 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 LENG8Q96PV6 779 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 CCNL2Q96S94 520 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 PSMB7Q99436 277 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP39-216ENST00000490193 C2orf49Q9BVC5 232 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 BOCQ9BWV1 1114 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 SLC17A9Q9BYT1 436 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 OSBPL2Q9H1P3 480 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 GOLPH3LQ9H4A5 285 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 DYRK4Q9NR20 520 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 RMND1Q9NWS8 449 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 DDIT4Q9NX09 232 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 VPS51Q9UID3 782 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ACSL6Q9UKU0 697 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 ATXN7L1Q9ULK2 861 aaPredicted RBP8.38□□□□□ -1.07
USP39-216ENST00000490193 FLNCQ14315 2725 aa8.38□□□□□ -1.07
USP39-216ENST00000490193 CHD5Q8TDI0 1954 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 CCDC187A0A096LP49 1063 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 RNF103O00237 685 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 TERTO14746 1132 aaKnown RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 MED7O43513 233 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 PCDH8O95206 1070 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 MT-CO1P00395 513 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 ITGB7P26010 798 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 NEK3P51956 506 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 RPS21P63220 83 aaKnown RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 CETN1Q12798 172 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 PDCLQ13371 301 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 NR0B2Q15466 257 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 TAF5Q15542 800 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 CDKN3Q16667 212 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 TSR1Q2NL82 804 aaKnown RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 ZNF542PQ5EBM4 170 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 OR6B2Q6IFH4 312 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 C22orf39Q6P5X5 142 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 FOXR2Q6PJQ5 311 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 RRAGAQ7L523 313 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 SETD3Q86TU7 594 aaPredicted RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 DEFB106AQ8N104 65 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 EXD3Q8N9H8 876 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 DCAF4L2Q8NA75 395 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 ATP11CQ8NB49 1132 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 CHST14Q8NCH0 376 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 DENND6BQ8NEG7 585 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 SPATA20Q8TB22 786 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 BTN2A2Q8WVV5 523 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 ASB12Q8WXK4 309 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 NAT6Q93015 286 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 LIN37Q96GY3 246 aaPredicted RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 CCDC34Q96HJ3 373 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 PPP1R16AQ96I34 528 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 CEP63Q96MT8 703 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 GSDMAQ96QA5 445 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 KLF6Q99612 283 aaPredicted RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 C1QTNF2Q9BXJ5 285 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 GTPBP4Q9BZE4 634 aaKnown RBP8.37□□□□□ -1.07
USP39-216ENST00000490193 MUC3BQ9H195 1237 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 FAM204AQ9H8W3 233 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 IGSF5Q9NSI5 407 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 STARD5Q9NSY2 213 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 IL36AQ9UHA7 158 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 IL17BQ9UHF5 180 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 KLF15Q9UIH9 416 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 VANGL2Q9ULK5 521 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 PCDHGA7Q9Y5G6 932 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 FADS3Q9Y5Q0 445 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 HS3ST4Q9Y661 456 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 WASF2Q9Y6W5 498 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 LRP4O75096 1905 aa8.37□□□□□ -1.07
USP39-216ENST00000490193 UNC79Q9P2D8 2635 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 AHCTF1Q8WYP5 2266 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 CPED1A4D0V7 1026 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 PMS2P1A4D2B8 440 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 TRIM49BA6NDI0 452 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 K7ERQ8 282 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 NTN3O00634 580 aaPredicted RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 RAD51BO15315 384 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 EFSO43281 561 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 MAP3K7O43318 606 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 SMAD6O43541 496 aaKnown RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 BNIP3LO60238 219 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 SNAP91O60641 907 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 HSF2BPO75031 334 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 PAGE1O75459 146 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 ZNF821O75541 412 aaPredicted RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 LEFTY1O75610 366 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 TNFSF15O95150 251 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 PAK4O96013 591 aaPredicted RBP8.36□□□□□ -1.07
USP39-216ENST00000490193 ITGB2P05107 769 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 RHOCP08134 193 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 ADRB3P13945 408 aa8.36□□□□□ -1.07
USP39-216ENST00000490193 JUNDP17535 347 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms