RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 GTF3C3Q9Y5Q9 886 aa12.65□□□□□ -0.38
CPSF3-204ENST00000489403 ACTL7AQ9Y615 435 aa12.65□□□□□ -0.38
CPSF3-204ENST00000489403 CHD5Q8TDI0 1954 aa12.65□□□□□ -0.38
CPSF3-204ENST00000489403 COL27A1Q8IZC6 1860 aaPredicted RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 LY6G6EA0A0G2JKS1 128 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 POM121BA6NF01 834 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 GOLGA8SH3BPF8 625 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 RAD51BO15315 384 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 CD160O95971 181 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 MMEP08473 750 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 ALPPL2P10696 532 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 MYF5P13349 255 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 PRKCSHP14314 528 aaPredicted RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 ITGB7P26010 798 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 ACTN2P35609 894 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 CCNHP51946 323 aaPredicted RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 NOMO3P69849 1222 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 GNA12Q03113 381 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 HSP90AA4PQ58FG1 418 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 KLHDC7AQ5VTJ3 777 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 CDCP2Q5VXM1 449 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 KIAA1161Q6NSJ0 714 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 RETSATQ6NUM9 610 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 KYAT3Q6YP21 454 aaKnown RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 PARS2Q7L3T8 475 aaKnown RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 NOP9Q86U38 636 aaKnown RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 FAM114A1Q8IWE2 563 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 DRC7Q8IY82 874 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 PCDH20Q8N6Y1 951 aaKnown RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 FAM174AQ8TBP5 190 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 APOLD1Q96LR9 279 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 FCRL3Q96P31 734 aaPredicted RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 HEPHQ9BQS7 1158 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 TUBGCP2Q9BSJ2 902 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 NAA15Q9BXJ9 866 aaKnown RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 SLC17A9Q9BYT1 436 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 ZYG11BQ9C0D3 744 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 TMEM51Q9NW97 253 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 DNAJC28Q9NX36 388 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 PPARGC1AQ9UBK2 798 aaKnown RBP12.64□□□□□ -0.39
CPSF3-204ENST00000489403 HS3ST3A1Q9Y663 406 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 U3KQA8 63 aa12.64□□□□□ -0.39
CPSF3-204ENST00000489403 K7ESM1 405 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 SCAMP1O15126 338 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 ATXN7O15265 892 aaPredicted RBP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 AP1G1O43747 822 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 OPA1O60313 960 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 C1QL1O75973 258 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 NEBLO76041 1014 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 LSM8O95777 96 aaKnown RBP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 PAK4O96013 591 aaPredicted RBP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 L1CAMP32004 1257 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 ACVRL1P37023 503 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 ABL2P42684 1182 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 DNA2P51530 1060 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 HNRNPKP61978 463 aaKnown RBP eCLIP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 RPS21P63220 83 aaKnown RBP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 SLC20A2Q08357 652 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 CCDC173Q0VFZ6 552 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 FZD2Q14332 565 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 RAB6CQ53S08 254 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 CARD16Q5EG05 197 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 DCP2Q8IU60 420 aaKnown RBP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 EMC1Q8N766 993 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 FAM181AQ8N9Y4 354 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 EPS8L1Q8TE68 723 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 CPA5Q8WXQ8 436 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 SLC39A7Q92504 469 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 TM6SF2Q9BZW4 377 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 RAB6CQ9H0N0 254 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 METTL5Q9NRN9 209 aaKnown RBP12.63□□□□□ -0.39
CPSF3-204ENST00000489403 NDFIP2Q9NV92 336 aa12.63□□□□□ -0.39
CPSF3-204ENST00000489403 SPTY2D1-AS1A0A0U1RR47 76 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 NEMP2A6NFY4 417 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 F8VZ95 297 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 CSF2P04141 144 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 MPOP05164 745 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 GP1BAP07359 652 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 UCHL3P15374 230 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 GKP32189 559 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 ATP11AP98196 1134 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 TLE3Q04726 772 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 C15orf59Q2T9L4 293 aaPredicted RBP12.62□□□□□ -0.39
CPSF3-204ENST00000489403 DPCR1Q3MIW9 517 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 TPRG1LQ5T0D9 272 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 MANEALQ5VSG8 457 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 NAA35Q5VZE5 725 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 ARCQ7LC44 396 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 PARGQ86W56 976 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 SPACA3Q8IXA5 215 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 MSANTD4Q8NCY6 345 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 ZNF548Q8NEK5 533 aaPredicted RBP12.62□□□□□ -0.39
CPSF3-204ENST00000489403 OR6K2Q8NGY2 324 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 IFI44Q8TCB0 444 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 FEM1CQ96JP0 617 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 LENG8Q96PV6 779 aaPredicted RBP12.62□□□□□ -0.39
CPSF3-204ENST00000489403 DEPDC7Q96QD5 511 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 KLF6Q99612 283 aaPredicted RBP12.62□□□□□ -0.39
CPSF3-204ENST00000489403 DUSP23Q9BVJ7 150 aa12.62□□□□□ -0.39
CPSF3-204ENST00000489403 ZDHHC6Q9H6R6 413 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms