RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 SERAC1Q96JX3 654 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 GAS2L1Q99501 681 aaPredicted RBP8.62□□□□□ -1.03
VTI1A-207ENST00000489357 TSSK1BQ9BXA7 367 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 MLXIPLQ9NP71 852 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 KLC4Q9NSK0 619 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 ABCF3Q9NUQ8 709 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 TMEM30AQ9NV96 361 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 PPARGC1AQ9UBK2 798 aaKnown RBP8.62□□□□□ -1.03
VTI1A-207ENST00000489357 MID2Q9UJV3 735 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 SORCS3Q9UPU3 1222 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 TLR6Q9Y2C9 796 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 EYSQ5T1H1 3165 aa8.62□□□□□ -1.03
VTI1A-207ENST00000489357 MTCL1Q9Y4B5 1905 aaKnown RBP8.62□□□□□ -1.03
VTI1A-207ENST00000489357 REV3LO60673 3130 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 ANKRD65E5RJM6 399 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 TIMM44O43615 452 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 MGRN1O60291 552 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 H2AFYO75367 372 aaKnown RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 UBOX5O94941 541 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SNUPNO95149 360 aaKnown RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 ITGB1P05556 798 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 APOA4P06727 396 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 GALTP07902 379 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CSH1P0DML2 217 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CSH2P0DML3 217 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 GRK2P25098 689 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 PSMB4P28070 264 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SPRP35270 261 aaPredicted RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 KPNA1P52294 538 aaPredicted RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 NDST2P52849 883 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SLC5A3P53794 718 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CACNA2D1P54289 1103 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 TNK2Q07912 1038 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 UGP2Q16851 508 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CCDC153Q494R4 210 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 AFMIDQ63HM1 303 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CASC4Q6P4E1 433 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CYB5D1Q6P9G0 228 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 PACS1Q6VY07 963 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 ASRGL1Q7L266 308 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 RNF168Q8IYW5 571 aaPredicted RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 NUP93Q8N1F7 819 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SLC39A11Q8N1S5 342 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 LRRC43Q8N309 656 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 TAB3Q8N5C8 712 aaPredicted RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 FITM2Q8N6M3 262 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 RNF169Q8NCN4 708 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 OR10T2Q8NGX3 314 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SPPL2BQ8TCT7 592 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SREK1Q8WXA9 508 aaKnown RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 STON2Q8WXE9 905 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 RNF34Q969K3 372 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 FAM193BQ96PV7 902 aaPredicted RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 FCRL5Q96RD9 977 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 CDK5RAP1Q96SZ6 601 aaKnown RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 PAAF1Q9BRP4 392 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 MRPL9Q9BYD2 267 aaKnown RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 LRMDAQ9H2I8 198 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 MRM3Q9HC36 420 aaKnown RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 SLC40A1Q9NP59 571 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 ENTPD7Q9NQZ7 604 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 ARHGEF3Q9NR81 526 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 KCNK4Q9NYG8 393 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 ZFATQ9P243 1243 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 LNPEPQ9UIQ6 1025 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 VANGL2Q9ULK5 521 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 LZTS1Q9Y250 596 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 PCDHB5Q9Y5E4 795 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 TIMM13Q9Y5L4 95 aaPredicted RBP8.61□□□□□ -1.03
VTI1A-207ENST00000489357 MTCH2Q9Y6C9 303 aa8.61□□□□□ -1.03
VTI1A-207ENST00000489357 WDR27A2RRH5 827 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 ARHGAP42A6NI28 874 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 CXorf49A8MYA2 514 aaPredicted RBP8.6□□□□□ -1.03
VTI1A-207ENST00000489357 KCNU1A8MYU2 1149 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 FOXO6A8MYZ6 492 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 FAM72CH0Y354 149 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 H7C4K7 107 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 I6L893 689 aaPredicted RBP8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MEN1O00255 615 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 CHUKO15111 745 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MATN3O15232 486 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MPOP05164 745 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 NEFHP12036 1026 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MYL4P12829 197 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 LAG3P18627 525 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 IGFBP4P22692 258 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MGAT1P26572 445 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 HNRNPH1P31943 449 aaKnown RBP8.6□□□□□ -1.03
VTI1A-207ENST00000489357 GRIK1P39086 918 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MAGEA12P43365 314 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 BRCC3P46736 316 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 SERPINB8P50452 374 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 HK2P52789 917 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 LIMK2P53671 638 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 PRKAA2P54646 552 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 GEMP55040 296 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 MLLT6P55198 1093 aaPredicted RBP8.6□□□□□ -1.03
VTI1A-207ENST00000489357 NCALDP61601 193 aa8.6□□□□□ -1.03
VTI1A-207ENST00000489357 UBE3AQ05086 875 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms