RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SLC6A17Q9H1V8 727 aa17.41■□□□□ 0.38
VIM-205ENST00000485947 RSPH9Q9H1X1 276 aaPredicted RBP17.41■□□□□ 0.38
VIM-205ENST00000485947 RETREG1Q9H6L5 497 aa17.41■□□□□ 0.38
VIM-205ENST00000485947 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.41■□□□□ 0.38
VIM-205ENST00000485947 TPX2Q9ULW0 747 aaKnown RBP17.41■□□□□ 0.38
VIM-205ENST00000485947 ERVW-1Q9UQF0 538 aa17.41■□□□□ 0.38
VIM-205ENST00000485947 PKD1L2Q7Z442 2459 aa17.41■□□□□ 0.38
VIM-205ENST00000485947 hCG_1818297A0A087WSY0 165 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 SYNJ2BP-COX16A0A087WUM0 186 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 EDDM13A0A1B0GTR0 161 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 C3orf70A6NLC5 250 aaPredicted RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 C4orf47A7E2U8 309 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 UPK3BL1B0FP48 263 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 PATE3B3GLJ2 98 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 UPK3BL2E5RIL1 263 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 CCDC188H7C350 402 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 CDX4O14627 284 aaPredicted RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 PAGE1O75459 146 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 HLA-EP13747 358 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 ADRA1BP35368 520 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 CDKN2BP42772 138 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 CDH4P55283 916 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 CDH6P55285 790 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 RPS14P62263 151 aaKnown RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 ZNF177Q13360 481 aaPredicted RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 KRT81Q14533 505 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 TAZQ16635 292 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 MFSD7Q6UXD7 560 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 CCDC185Q8N715 623 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 RAPGEF5Q92565 580 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 RNF25Q96BH1 459 aaPredicted RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 MYEOVQ96EZ4 313 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 MRGPRX3Q96LB0 322 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 HAPLN3Q96S86 360 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 ZNF670Q9BS34 389 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 SGK2Q9HBY8 427 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 PCDH18Q9HCL0 1135 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 COX16Q9P0S2 106 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 RCOR3Q9P2K3 495 aaPredicted RBP17.4■□□□□ 0.38
VIM-205ENST00000485947 TBC1D30Q9Y2I9 924 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 HS3ST4Q9Y661 456 aa17.4■□□□□ 0.38
VIM-205ENST00000485947 GOLGA6L10A0A0M3HER8 536 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 A0A1B0GTW7 788 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 ARHGAP33O14559 1287 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 CFIP05156 583 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 ENGP17813 658 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 ATXN3P54252 364 aaPredicted RBP17.39■□□□□ 0.37
VIM-205ENST00000485947 AADACL2Q6P093 401 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 LRRC31Q6UY01 552 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 RGL4Q8IZJ4 473 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 SPATA4Q8NEY3 305 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 GPR174Q9BXC1 333 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 BTBD1Q9H0C5 482 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 TKTL2Q9H0I9 626 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 DHX35Q9H5Z1 703 aaKnown RBP17.39■□□□□ 0.37
VIM-205ENST00000485947 KLHL11Q9NVR0 708 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 RALYQ9UKM9 306 aaKnown RBP17.39■□□□□ 0.37
VIM-205ENST00000485947 NCKAP1Q9Y2A7 1128 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 GON4LQ3T8J9 2241 aa17.39■□□□□ 0.37
VIM-205ENST00000485947 MEI4A8MW99 385 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 EFCAB8A8MWE9 144 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 KRIT1O00522 736 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 TJP3O95049 919 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 CEACAM1P13688 526 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 L1CAMP32004 1257 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 SLC14A1Q13336 389 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 DPYSL3Q14195 570 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 CXorf57Q6NSI4 855 aaKnown RBP17.38■□□□□ 0.37
VIM-205ENST00000485947 SETD3Q86TU7 594 aaPredicted RBP17.38■□□□□ 0.37
VIM-205ENST00000485947 CALN1Q9BXU9 219 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 GPATCH2LQ9NWQ4 482 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 SMARCAL1Q9NZC9 954 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 VANGL2Q9ULK5 521 aa17.38■□□□□ 0.37
VIM-205ENST00000485947 MUC22E2RYF6 1773 aaPredicted RBP17.38■□□□□ 0.37
VIM-205ENST00000485947 TNRC6BQ9UPQ9 1833 aaKnown RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 IGLV3-10A0A075B6K4 115 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 CXorf51AA0A1B0GTR3 108 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 DRGXA6NNA5 263 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 KCNK5O95279 499 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 HTR7P34969 479 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 ARL4AP40617 200 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 KLF1Q13351 362 aaPredicted RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 COL9A2Q14055 689 aaPredicted RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 HNRNPDQ14103 355 aaKnown RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 TFDP2Q14188 446 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 ELAVL3Q14576 367 aaKnown RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 CA9Q16790 459 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 C9orf64Q5T6V5 341 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 IL27RAQ6UWB1 636 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 ZNF783Q6ZMS7 281 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 MYRIPQ8NFW9 859 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 TSC1Q92574 1164 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 IGSF8Q969P0 613 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 FAF2Q96CS3 445 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 KCTD15Q96SI1 283 aaPredicted RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 FEM1AQ9BSK4 669 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 OSBPL2Q9H1P3 480 aa17.37■□□□□ 0.37
VIM-205ENST00000485947 PABPC3Q9H361 631 aaKnown RBP17.37■□□□□ 0.37
VIM-205ENST00000485947 CD93Q9NPY3 652 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms