RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 NAA35Q5VZE5 725 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM72DQ6L9T8 149 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GCNT7Q6ZNI0 430 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RBM43Q6ZSC3 357 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM72BQ86X60 149 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SLC22A18ASQ8N1D0 253 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PCDH20Q8N6Y1 951 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 OR13H1Q8NG92 308 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 OR4C6Q8NH72 309 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM174AQ8TBP5 190 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HNRNPLLQ8WVV9 542 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KLK6Q92876 244 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MAGEB5Q9BZ81 275 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PDCL3Q9H2J4 239 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TNKS2Q9H2K2 1166 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CAAP1Q9H8G2 361 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 OR12D3Q9UGF7 316 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DACH1Q9UI36 760 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FADS3Q9Y5Q0 445 aa12.5□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 COL27A1Q8IZC6 1860 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LY6G6EA0A0G2JKS1 128 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PIAS2O75928 621 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HNRNPA2B1P22626 353 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ITGB7P26010 798 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 L1CAMP32004 1257 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HNF1BP35680 557 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PTPN9P43378 593 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KLK7P49862 253 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 INSM1Q01101 510 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 COL9A2Q14055 689 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KRT31Q15323 416 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CARD16Q5EG05 197 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SEL1L3Q68CR1 1132 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RETSATQ6NUM9 610 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 EMC1Q8N766 993 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DCBLD1Q8N8Z6 715 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RXFP2Q8WXD0 754 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ARHGEF2Q92974 986 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LENG8Q96PV6 779 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PCDHB18PQ96TA0 734 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KLF6Q99612 283 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HEPHQ9BQS7 1158 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SLC17A9Q9BYT1 436 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NUP62CLQ9H1M0 184 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FZD3Q9NPG1 666 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 METTL5Q9NRN9 209 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LMBRD1Q9NUN5 540 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TMEM248Q9NWD8 314 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 UCKL1Q9NWZ5 548 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SIK3Q9Y2K2 1263 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DAAM1Q9Y4D1 1078 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ACTL7AQ9Y615 435 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 U3KQA8 63 aa12.49□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TCRBV5S1A1TA0A578 114 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM170AA1A519 330 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 POM121BA6NF01 834 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LRRC10BA6NIK2 292 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SPINT1O43278 529 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TLX3O43711 291 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SDC3O75056 442 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GFPT2O94808 682 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ADRB3P13945 408 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RHOQP17081 205 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 AKT2P31751 481 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SOX5P35711 763 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ACVRL1P37023 503 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MAPKAPK2P49137 400 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CCNHP51946 323 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NEK3P51956 506 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HDAC4P56524 1084 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CLDN2P57739 230 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ATP11AP98196 1134 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C15orf59Q2T9L4 293 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KIAA1161Q6NSJ0 714 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 STRADAQ7RTN6 431 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DCP2Q8IU60 420 aaKnown RBP12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM181AQ8N9Y4 354 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MSANTD4Q8NCY6 345 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 JOSD2Q8TAC2 188 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GRIN3AQ8TCU5 1115 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GPT2Q8TD30 523 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ASB12Q8WXK4 309 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NTAN1Q96AB6 310 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PPP1R16AQ96I34 528 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 BBC3Q96PG8 261 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SPON2Q9BUD6 331 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C1QTNF2Q9BXJ5 285 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ATP13A1Q9HD20 1204 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TAB2Q9NYJ8 693 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FCF1Q9Y324 198 aaKnown RBP12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KALRNO60229 2985 aa12.48□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LRRK1Q38SD2 2015 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SPTY2D1-AS1A0A0U1RR47 76 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SCAMP1O15126 338 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RAD51BO15315 384 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LZTS3O60299 673 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LRIG2O94898 1065 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PCDH8O95206 1070 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PAK4O96013 591 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CKMT1AP12532 417 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms