RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 SAE1Q9UBE0 346 aaPredicted RBP7.14□□□□□ -1.27
LIMD1-204ENST00000474665 VPS28Q9UK41 221 aa7.14□□□□□ -1.27
LIMD1-204ENST00000474665 AMFRQ9UKV5 643 aa7.14□□□□□ -1.27
LIMD1-204ENST00000474665 ERVW-1Q9UQF0 538 aa7.14□□□□□ -1.27
LIMD1-204ENST00000474665 HS3ST2Q9Y278 367 aa7.14□□□□□ -1.27
LIMD1-204ENST00000474665 TRPM6Q9BX84 2022 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 PLXND1Q9Y4D7 1925 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 CCDC66A2RUB6 948 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 J3QKU1 62 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 CBX4O00257 560 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 KDELR3O43731 214 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 NRDCO43847 1150 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ATP9BO43861 1147 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 PRAMEF11O60813 436 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 RAMP2O60895 175 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ZRANB2O95218 330 aaKnown RBP eCLIP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 C7P10643 843 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 SRCP12931 536 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 CEACAM1P13688 526 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 PECAM1P16284 738 aaPredicted RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 POLR2EP19388 210 aaKnown RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 NTSR1P30989 418 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 PTPN7P35236 360 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ARL4AP40617 200 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 VASPP50552 380 aaPredicted RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 NDST2P52849 883 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 YBEYP58557 167 aaPredicted RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 SRSF1Q07955 248 aaKnown RBP eCLIP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 GALNT2Q10471 571 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ZNF211Q13398 564 aaPredicted RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 LRRC32Q14392 662 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 IHHQ14623 411 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 CRY1Q16526 586 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 PPP2R5EQ16537 467 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 IFI16Q16666 785 aaKnown RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 PARP15Q460N3 678 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 TMCO3Q6UWJ1 677 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 NPNTQ6UXI9 565 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 B4GALNT4Q76KP1 1039 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 SYT13Q7L8C5 426 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 RCOR2Q8IZ40 523 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 SYCE1Q8N0S2 351 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 TXLNBQ8N3L3 684 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 SH2D3CQ8N5H7 860 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ZNF557Q8N988 423 aaPredicted RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 KCNV2Q8TDN2 545 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 SLC39A7Q92504 469 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 NSMCE3Q96MG7 304 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 OLFM3Q96PB7 478 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 WDR24Q96S15 920 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 HEMGNQ9BXL5 484 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ATP13A1Q9HD20 1204 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 DDX56Q9NY93 547 aaKnown RBP7.13□□□□□ -1.27
LIMD1-204ENST00000474665 MMP17Q9ULZ9 603 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 RAD54BQ9Y620 910 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 STON1Q9Y6Q2 735 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 MYO18BQ8IUG5 2567 aa7.13□□□□□ -1.27
LIMD1-204ENST00000474665 ASXL3Q9C0F0 2248 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 THADAQ6YHU6 1953 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CEP192Q8TEP8 1941 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 MIF4GDA9UHW6 222 aaKnown RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 PYCARD-AS1I3L0S3 204 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 DFFAO00273 331 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 ENC1O14682 589 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 MUSKO15146 869 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 DAPK3O43293 454 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 ZSCAN12O43309 604 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 MAFKO60675 156 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CST8O60676 142 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 GJB3O75712 270 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 KRT38O76015 456 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 PAPSS2O95340 614 aaPredicted RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 ASLP04424 464 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 ATP1A1P05023 1023 aaKnown RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 ATP5BP06576 529 aaKnown RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CNR2P34972 360 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 RGRP47804 291 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CXCL12P48061 93 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 SERPINH1P50454 418 aaKnown RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 DNA2P51530 1060 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CCR3P51677 355 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 COPAP53621 1224 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 OXCT1P55809 520 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 RWDD2BP57060 319 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 SULT2A1Q06520 285 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 KLF1Q13351 362 aaPredicted RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CAMK2GQ13555 558 aaPredicted RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 CYTH1Q15438 398 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 SIX1Q15475 284 aaPredicted RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 DLG2Q15700 870 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 HNRNPA1L2Q32P51 320 aaKnown RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 PREPLQ4J6C6 727 aaPredicted RBP7.12□□□□□ -1.27
LIMD1-204ENST00000474665 TFDP3Q5H9I0 405 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 ZNF569Q5MCW4 686 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 PLA2G2CQ5R387 149 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 C9orf64Q5T6V5 341 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 KAZNQ674X7 775 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 BBS12Q6ZW61 710 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 LONP2Q86WA8 852 aa7.12□□□□□ -1.27
LIMD1-204ENST00000474665 MAP7D3Q8IWC1 876 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms