RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 MINDY3Q9H8M7 445 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 PLEKHA5Q9HAU0 1116 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 GPR35Q9HC97 309 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 MRPL17Q9NRX2 175 aaKnown RBP6.67□□□□□ -1.34
PTCD3-208ENST00000469585 TBC1D7Q9P0N9 293 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 CFAP97Q9P2B7 532 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 COG5Q9UP83 839 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 FRMD4BQ9Y2L6 1034 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 MYH15Q9Y2K3 1946 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 MYH11P35749 1972 aa6.67□□□□□ -1.34
PTCD3-208ENST00000469585 SF3B1O75533 1304 aaKnown RBP eCLIP6.67□□□□□ -1.34
PTCD3-208ENST00000469585 TTC3P53804 2025 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 KRTAP4-8A0A0G2JLE6 195 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 CFAP69A5D8W1 941 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 MYMKA6NI61 221 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 OGTO15294 1046 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 B4GALT5O43286 388 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 CALUO43852 315 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 RECQL4O94761 1208 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 ZNF202O95125 648 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 ZNF20P17024 532 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 PTMSP20962 102 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 HOXA11P31270 313 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 NDUFV1P49821 464 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 SOX8P57073 446 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 NOMO3P69849 1222 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 GTF2BQ00403 316 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 COASYQ13057 564 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 COBLL1Q53SF7 1204 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 SHC4Q6S5L8 630 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 ZNF720Q7Z2F6 126 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 MRPL10Q7Z7H8 261 aaKnown RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 METTL23Q86XA0 190 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 RHOT2Q8IXI1 618 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 PALM2Q8IXS6 379 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 CCDC150Q8NCX0 1101 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 TMIEQ8NEW7 156 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 POF1BQ8WVV4 589 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 LRTOMTQ8WZ04 291 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 SMARCE1Q969G3 411 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 KLHL32Q96NJ5 620 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 EIF2AQ9BY44 585 aaKnown RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 TRIM9Q9C026 710 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 TTYH1Q9H313 450 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 ST6GALNAC4Q9H4F1 302 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 TLE6Q9H808 572 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 POLD4Q9HCU8 107 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 SLAMF7Q9NQ25 335 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 BLOC1S4Q9NUP1 217 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 TBC1D13Q9NVG8 400 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 THEGQ9P2T0 379 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 AGO2Q9UKV8 859 aaKnown RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 PRG3Q9Y2Y8 225 aaPredicted RBP6.66□□□□□ -1.34
PTCD3-208ENST00000469585 CHST2Q9Y4C5 530 aa6.66□□□□□ -1.34
PTCD3-208ENST00000469585 TET1Q8NFU7 2136 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 COL4A6Q14031 1691 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 RALGAPA2Q2PPJ7 1873 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 A0A1W2PPL8 197 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 ZNF233A6NK53 670 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 DIRC3C9JPN6 131 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 MYO1FO00160 1098 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 TRIM24O15164 1050 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 ZNF185O15231 689 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 B3GAT3O94766 335 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 FGFR1OPO95684 399 aaKnown RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 TNNC2P02585 160 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 RPN1P04843 607 aaKnown RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 TMEM191BP0C7N4 346 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 KITP10721 976 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 KRT13P13646 458 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 PEX2P28328 305 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 NMT1P30419 496 aaKnown RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 RPL9P32969 192 aaKnown RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 NDUFA8P51970 172 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 ARFIP2P53365 341 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 UBE2HP62256 183 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 POU5F1Q01860 360 aaKnown RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 MYO1EQ12965 1108 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 TMEM132DQ14C87 1099 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 POLD3Q15054 466 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 TCTN1Q2MV58 587 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 USP41Q3LFD5 358 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 CLLU1OSQ5K130 101 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 PLPP4Q5VZY2 271 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 CES5AQ6NT32 575 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 PPP4R4Q6NUP7 873 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 USP49Q70CQ1 688 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 CDR2LQ86X02 465 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 CEP57Q86XR8 500 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 VPS52Q8N1B4 723 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 APPL2Q8NEU8 664 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 SCAMP4Q969E2 229 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 SYAP1Q96A49 352 aaPredicted RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 PAGE5Q96GU1 130 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 ANKRD36BP1Q96IX9 119 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 ZNF560Q96MR9 790 aa6.65□□□□□ -1.34
PTCD3-208ENST00000469585 DCLRE1CQ96SD1 692 aaKnown RBP6.65□□□□□ -1.34
PTCD3-208ENST00000469585 IMPG2Q9BZV3 1241 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms