RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CNTN5O94779 1100 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 VHLP40337 213 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 PKN3Q6P5Z2 889 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 RPAINQ86UA6 219 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 SOCS4Q8WXH5 440 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 CDH19Q9H159 772 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 RAD54BQ9Y620 910 aa19.37■□□□□ 0.69
VIM-203ENST00000469543 E9PAM4 449 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 TIMM44O43615 452 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 ZNF623O75123 536 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 CCNCP24863 283 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 ARCN1P48444 511 aaKnown RBP19.36■□□□□ 0.69
VIM-203ENST00000469543 COPAP53621 1224 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 ACTR3P61158 418 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 EPGNQ6UW88 154 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 RNF135Q8IUD6 432 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 DEFB107AQ8IZN7 70 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 LENG8Q96PV6 779 aaPredicted RBP19.36■□□□□ 0.69
VIM-203ENST00000469543 GPR22Q99680 433 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 NOL6Q9H6R4 1146 aaKnown RBP19.36■□□□□ 0.69
VIM-203ENST00000469543 ABCC13Q9NSE7 274 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 RRN3Q9NYV6 651 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 NOD1Q9Y239 953 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 ZNF236Q9UL36 1845 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 MANSC4A6NHS7 340 aaPredicted RBP19.36■□□□□ 0.69
VIM-203ENST00000469543 ADAMTS4O75173 837 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 LMNAP02545 664 aaKnown RBP19.36■□□□□ 0.69
VIM-203ENST00000469543 CYP11A1P05108 521 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 MPOP05164 745 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 HAPLN1P10915 354 aaPredicted RBP19.36■□□□□ 0.69
VIM-203ENST00000469543 SLC1A2P43004 574 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 PRKCZQ05513 592 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 IRF5Q13568 498 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 PIK3R6Q5UE93 754 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 RNF111Q6ZNA4 994 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 SH3RF2Q8TEC5 729 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 IRGQQ8WZA9 623 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 MRGPRX2Q96LB1 330 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 FSD1LQ9BXM9 530 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 ADAM28Q9UKQ2 775 aa19.36■□□□□ 0.69
VIM-203ENST00000469543 TDRD15B5MCY1 1934 aaKnown RBP19.35■□□□□ 0.69
VIM-203ENST00000469543 PIGNO95427 931 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 CDK18Q07002 472 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ITKQ08881 620 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ANO4Q32M45 955 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ALFQ53S48 1182 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 PCID2Q5JVF3 399 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ZNF470Q6ECI4 717 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 CIR1Q86X95 450 aaPredicted RBP19.35■□□□□ 0.69
VIM-203ENST00000469543 ATAD1Q8NBU5 361 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 SH3TC2Q8TF17 1288 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 DNAJC28Q9NX36 388 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 XPR1Q9UBH6 696 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 FIS1Q9Y3D6 152 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 MATN3O15232 486 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 HMBSP08397 361 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ANPEPP15144 967 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 TSPY1Q01534 308 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 SLC10A7Q0GE19 358 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 CUL3Q13618 768 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 DSC3Q14574 896 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 RBM20Q5T481 1227 aaKnown RBP19.35■□□□□ 0.69
VIM-203ENST00000469543 CNSTQ6PJW8 725 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 MIB1Q86YT6 1006 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ARHGAP24Q8N264 748 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 CCNYL1Q8N7R7 359 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 IL12RB2Q99665 862 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 RHOJQ9H4E5 214 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 ZFYVE28Q9HCC9 887 aa19.35■□□□□ 0.69
VIM-203ENST00000469543 AAR2Q9Y312 384 aaKnown RBP19.35■□□□□ 0.69
VIM-203ENST00000469543 MYLKQ15746 1914 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 CACNG3O60359 315 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 TFEBP19484 476 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 ARPP19P56211 112 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 TAS2R39P59534 338 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 BLMHQ13867 455 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 THEM5Q8N1Q8 247 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 PABPC5Q96DU9 382 aaKnown RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 SUDS3Q9H7L9 328 aaPredicted RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 HCSTQ9UBK5 93 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 IPO11Q9UI26 975 aaKnown RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 NYNRINQ9P2P1 1898 aaKnown RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 BUD23O43709 281 aaKnown RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 DLX3O60479 287 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 KLHL2O95198 593 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 ALOX15P16050 662 aaPredicted RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 CDK7P50613 346 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 MANEALQ5VSG8 457 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 IL31Q6EBC2 164 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 NET1Q7Z628 596 aaPredicted RBP19.34■□□□□ 0.69
VIM-203ENST00000469543 ZNF354CQ86Y25 554 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 FCRL5Q96RD9 977 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 C1orf21Q9H246 121 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 SLC27A5Q9Y2P5 690 aa19.34■□□□□ 0.69
VIM-203ENST00000469543 FAM95CA0A1B0GW59 222 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 ITGAXP20702 1163 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 ADRA1AP35348 466 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 OR1G1P47890 313 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 GRIK3Q13003 919 aa19.33■□□□□ 0.69
VIM-203ENST00000469543 DNAL1Q4LDG9 190 aa19.33■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms