RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 METTL5Q9NRN9 209 aaKnown RBP16.42■□□□□ 0.22
COL7A1-204ENST00000462475 GPR27Q9NS67 375 aa16.42■□□□□ 0.22
COL7A1-204ENST00000462475 PCDHB1Q9Y5F3 818 aa16.42■□□□□ 0.22
COL7A1-204ENST00000462475 ASXL3Q9C0F0 2248 aa16.42■□□□□ 0.22
COL7A1-204ENST00000462475 GCN1Q92616 2671 aaKnown RBP16.42■□□□□ 0.22
COL7A1-204ENST00000462475 A6NNZ2 444 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 RAD51BO15315 384 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 CD160O95971 181 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 MT-CO3P00414 261 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 ACVRL1P37023 503 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 DNA2P51530 1060 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 ATP11AP98196 1134 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 MAPK8IP2Q13387 824 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-204ENST00000462475 HS1BP3Q53T59 392 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 CARD16Q5EG05 197 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 LRRC69Q6ZNQ3 347 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 Q6ZSR6 202 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 PARS2Q7L3T8 475 aaKnown RBP16.41■□□□□ 0.22
COL7A1-204ENST00000462475 MSANTD4Q8NCY6 345 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 SLC20A1Q8WUM9 679 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 BMFQ96LC9 184 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 HEPHQ9BQS7 1158 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 TM6SF2Q9BZW4 377 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 PRORYQ9H606 182 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 SAMSN1Q9NSI8 373 aaKnown RBP16.41■□□□□ 0.22
COL7A1-204ENST00000462475 NDFIP2Q9NV92 336 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 TMEM51Q9NW97 253 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 RAI2Q9Y5P3 530 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 FADS3Q9Y5Q0 445 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 KALRNO60229 2985 aa16.41■□□□□ 0.22
COL7A1-204ENST00000462475 LY6G6EA0A0G2JKS1 128 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 POM121BA6NF01 834 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 PAK4O96013 591 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 CKMT1AP12532 417 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 ERCC5P28715 1186 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 L1CAMP32004 1257 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 GKP32189 559 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 RPS21P63220 83 aaKnown RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 E2F1Q01094 437 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 SLC20A2Q08357 652 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 CDO1Q16878 200 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 C15orf59Q2T9L4 293 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 MANEALQ5VSG8 457 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 KIAA1161Q6NSJ0 714 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 KYAT3Q6YP21 454 aaKnown RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 OR6K2Q8NGY2 324 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 IFT43Q96FT9 208 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 APOLD1Q96LR9 279 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 SLC17A9Q9BYT1 436 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 STK33Q9BYT3 514 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 ZDHHC6Q9H6R6 413 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 DNAJC28Q9NX36 388 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 NLGN3Q9NZ94 848 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 PPARGC1AQ9UBK2 798 aaKnown RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 NOCTQ9UK39 431 aaKnown RBP16.4■□□□□ 0.22
COL7A1-204ENST00000462475 U3KQA8 63 aa16.4■□□□□ 0.22
COL7A1-204ENST00000462475 MYLKQ15746 1914 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 EIF4E1BA6NMX2 242 aaKnown RBP16.39■□□□□ 0.21
COL7A1-204ENST00000462475 RRP8O43159 456 aaKnown RBP16.39■□□□□ 0.21
COL7A1-204ENST00000462475 NEBLO76041 1014 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 ALPPL2P10696 532 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 ABL2P42684 1182 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 FZD2Q14332 565 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 TBC1D25Q3MII6 688 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 CDCP2Q5VXM1 449 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 ARCQ7LC44 396 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 PHLDB2Q86SQ0 1253 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 NLRP14Q86W24 1093 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 ZNF548Q8NEK5 533 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-204ENST00000462475 BAP1Q92560 729 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 FGF11Q92914 225 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 VOPP1Q96AW1 172 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 UBL7Q96S82 380 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-204ENST00000462475 MAGEB5Q9BZ81 275 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 GANQ9H2C0 597 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 TAB2Q9NYJ8 693 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 HECAQ9UBI9 543 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-204ENST00000462475 GGT7Q9UJ14 662 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 NEU3Q9UQ49 428 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 ITM2BQ9Y287 266 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 HS3ST3A1Q9Y663 406 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 PTPRQQ9UMZ3 2332 aa16.39■□□□□ 0.21
COL7A1-204ENST00000462475 FAM72CH0Y354 149 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 K7ESM1 405 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 SCAMP1O15126 338 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 AP1G1O43747 822 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 OPA1O60313 960 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 GFPT2O94808 682 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 GJB6O95452 261 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 CYP1A1P04798 512 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-204ENST00000462475 NME1P15531 152 aaKnown RBP16.38■□□□□ 0.21
COL7A1-204ENST00000462475 ADRA1BP35368 520 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 KLK7P49862 253 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 HNRNPKP61978 463 aaKnown RBP eCLIP16.38■□□□□ 0.21
COL7A1-204ENST00000462475 CCDC14Q49A88 953 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 TCP11X2Q5H9J9 407 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 TPRG1LQ5T0D9 272 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 FAM72AQ5TYM5 149 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 FAM72DQ6L9T8 149 aa16.38■□□□□ 0.21
COL7A1-204ENST00000462475 RWDD4Q6NW29 188 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms