RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SLC38A10Q9HBR0 1119 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 VPS45Q9NRW7 570 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 CACNA2D2Q9NY47 1150 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 VPS28Q9UK41 221 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 MRPL42Q9Y6G3 142 aaKnown RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 MSCO60682 206 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 PIGRP01833 764 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 C8BP07358 591 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 PFKMP08237 780 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 CCND2P30279 289 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 NDST1P52848 882 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 TUBA4AP68366 448 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 FAM35AQ86V20 835 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 FAM131BQ86XD5 332 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 NT5DC4Q86YG4 428 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 DNAAF3Q8N9W5 541 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 HM13Q8TCT9 377 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 P2RY11Q96G91 374 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 QKIQ96PU8 341 aaKnown RBP eCLIP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 CSPG4P5Q96PW8 444 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 HERC2P3Q9BVR0 1158 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 DRC3Q9H069 523 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ZFYVE28Q9HCC9 887 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 FBRSL1Q9HCM7 1045 aaKnown RBP11.87□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF302Q9NR11 478 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 CHRAC1Q9NRG0 131 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 GGA3Q9NZ52 723 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 GIMAP2Q9UG22 337 aa11.87□□□□□ -0.51
CPSF3-202ENST00000460593 RGPD3A6NKT7 1758 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 RGPD4Q7Z3J3 1758 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 LTBP1Q14766 1721 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 A0A0A0MRY4 1105 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 KRBA1A5PL33 1030 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 H0YCG3 227 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 TOR1BO14657 336 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 GABBR2O75899 941 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 POLBP06746 335 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 MAP4P27816 1152 aaKnown RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 LIMK2P53671 638 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 ENPEPQ07075 957 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 PRPSAP1Q14558 356 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 GOLGA7BQ2TAP0 167 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 BOLA3Q53S33 107 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CNSTQ6PJW8 725 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 TMEM151AQ8N4L1 468 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 KHSRPQ92945 711 aaKnown RBP eCLIP11.86□□□□□ -0.516e-6■■■□□ 19
CPSF3-202ENST00000460593 ACDQ96AP0 544 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 TAMM41Q96BW9 452 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SPATA13Q96N96 652 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 DEFB129Q9H1M3 183 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SPON1Q9HCB6 807 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 HESX1Q9UBX0 185 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CPSF3Q9UKF6 684 aaKnown RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CNOT11Q9UKZ1 510 aaKnown RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 FAM32AQ9Y421 112 aaKnown RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 TMEM114B3SHH9 223 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CFAP99D6REC4 459 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SDHDO14521 159 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 OGTO15294 1046 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 DLX3O60479 287 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CILPO75339 1184 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SUPT20HL2P0C7V6 817 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 YWHAQP27348 245 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 OXTRP30559 389 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SPRP35270 261 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 GNL1P36915 607 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SUPT20HL1Q3ZLR7 823 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 TBCELQ5QJ74 424 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 IGFN1Q86VF2 1251 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 SLC41A1Q8IVJ1 513 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CPSF7Q8N684 471 aaKnown RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF280CQ8ND82 737 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 TRAPPC12Q8WVT3 735 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 ANKRD36BP1Q96IX9 119 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 CPNE1Q99829 537 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 KIAA1522Q9P206 1035 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 XPR1Q9UBH6 696 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 ZNF70Q9UC06 446 aaPredicted RBP11.86□□□□□ -0.51
CPSF3-202ENST00000460593 OAZ3Q9UMX2 235 aa11.86□□□□□ -0.51
CPSF3-202ENST00000460593 PRKCBP05771 671 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CHRM3P20309 590 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 EEF1B2P24534 225 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 ELK4P28324 431 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 PIGFQ07326 219 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CAPRIN1Q14444 709 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 ZIK1Q3SY52 487 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 GRTP1Q5TC63 336 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 LIPMQ5VYY2 423 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 PID1Q7Z2X4 250 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 NANOGNBQ7Z5D8 188 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 CLEC14AQ86T13 490 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 RNF135Q8IUD6 432 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 SIX6OS1Q8N1H7 587 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 FSTL5Q8N475 847 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 VPS39Q96JC1 886 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 MPHOSPH6Q99547 160 aaKnown RBP11.85□□□□□ -0.51
CPSF3-202ENST00000460593 NCKIPSDQ9NZQ3 722 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 FADS3Q9Y5Q0 445 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 BTAF1O14981 1849 aa11.85□□□□□ -0.51
CPSF3-202ENST00000460593 A6NL46 340 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms