RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 WASH4PA8MWX3 477 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 H0Y8X5 98 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 WNT9AO14904 365 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 KDELR3O43731 214 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 RNF8O76064 485 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 MYBL1P10243 752 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 HTR7P34969 479 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 CCNHP51946 323 aaPredicted RBP21.62■■□□□ 1.05
HMGB3-205ENST00000455596 YBEYP58557 167 aaPredicted RBP21.62■■□□□ 1.05
HMGB3-205ENST00000455596 SETMARQ53H47 684 aaPredicted RBP21.62■■□□□ 1.05
HMGB3-205ENST00000455596 NEK5Q6P3R8 708 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 ERN2Q76MJ5 926 aaKnown RBP21.62■■□□□ 1.05
HMGB3-205ENST00000455596 PLPP6Q8IY26 295 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 FNIP1Q8TF40 1166 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 HDAC8Q9BY41 377 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 TM6SF2Q9BZW4 377 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 AP4E1Q9UPM8 1137 aa21.62■■□□□ 1.05
HMGB3-205ENST00000455596 BZW2Q9Y6E2 419 aaKnown RBP21.62■■□□□ 1.05
HMGB3-205ENST00000455596 RNF103O00237 685 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 FGF10O15520 208 aaPredicted RBP21.61■■□□□ 1.05
HMGB3-205ENST00000455596 RNGTTO60942 597 aaKnown RBP21.61■■□□□ 1.05
HMGB3-205ENST00000455596 CBFA2T3O75081 653 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 TPI1P60174 286 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 RHBDD1Q8TEB9 315 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 SYN2Q92777 582 aaPredicted RBP21.61■■□□□ 1.05
HMGB3-205ENST00000455596 ISCUQ9H1K1 167 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 NOL6Q9H6R4 1146 aaKnown RBP21.61■■□□□ 1.05
HMGB3-205ENST00000455596 ZDHHC6Q9H6R6 413 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 MRPL47Q9HD33 250 aaKnown RBP21.61■■□□□ 1.05
HMGB3-205ENST00000455596 IFNKQ9P0W0 207 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 MYO1AQ9UBC5 1043 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 HECAQ9UBI9 543 aaPredicted RBP21.61■■□□□ 1.05
HMGB3-205ENST00000455596 WASF3Q9UPY6 502 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 KNL1Q8NG31 2342 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 ANKRD36A6QL64 1941 aa21.61■■□□□ 1.05
HMGB3-205ENST00000455596 CABIN1Q9Y6J0 2220 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 EIF3CLB5ME19 914 aaKnown RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 BUB1O43683 1085 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 PCDHGA12O60330 932 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 TRIM16O95361 564 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 TOP3BO95985 862 aaKnown RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 ITGB7P26010 798 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 NEK3P51956 506 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 SNRPD1P62314 119 aaKnown RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 ZBED6P86452 979 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 STAT4Q14765 748 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 ERMARDQ5T6L9 678 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 HGSNATQ68CP4 663 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 LEKR1Q6ZMV7 388 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 GLRX5Q86SX6 157 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 VPS36Q86VN1 386 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 RYBPQ8N488 228 aaPredicted RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 MFSD2AQ8NA29 543 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 OR2AP1Q8NGE2 309 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 CPLX3Q8WVH0 158 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 ELF4Q99607 663 aaPredicted RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 EIF3CQ99613 913 aaKnown RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 DHX35Q9H5Z1 703 aaKnown RBP21.6■■□□□ 1.05
HMGB3-205ENST00000455596 GDF3Q9NR23 364 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 GPATCH2LQ9NWQ4 482 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 DONSONQ9NYP3 566 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 PCSK1NQ9UHG2 260 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 CAPN11Q9UMQ6 739 aa21.6■■□□□ 1.05
HMGB3-205ENST00000455596 COL5A1P20908 1838 aaPredicted RBP21.59■■□□□ 1.05
HMGB3-205ENST00000455596 A0A1B0GTQ1 180 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 A0A1W2PQU0 124 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 RASA4BC9J798 803 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 PRAMEF26H0Y7S4 382 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 TLR4O00206 839 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 RASA4O43374 803 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 MAGEC1O60732 1142 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 GSRP00390 522 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 SPINK2P20155 84 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 PARP15Q460N3 678 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 FBXL19Q6PCT2 694 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 IQCHQ86VS3 1027 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 UMODL1-AS1Q8N2C9 162 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 ARFGAP1Q8N6T3 406 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 BAHD1Q8TBE0 780 aaPredicted RBP21.59■■□□□ 1.05
HMGB3-205ENST00000455596 CASKIN2Q8WXE0 1202 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 HMCESQ96FZ2 354 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 LRIG1Q96JA1 1093 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 CDC6Q99741 560 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 SNRNP25Q9BV90 132 aaKnown RBP21.59■■□□□ 1.05
HMGB3-205ENST00000455596 SCNM1Q9BWG6 230 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 TRIM7Q9C029 511 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 PTPRBP23467 1997 aa21.59■■□□□ 1.05
HMGB3-205ENST00000455596 EEF2KO00418 725 aaKnown RBP21.58■■□□□ 1.05
HMGB3-205ENST00000455596 PRPSAP2O60256 369 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 PCDH8O95206 1070 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 SERPING1P05155 500 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 ADRB3P13945 408 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 GRK6P43250 576 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 NXPH1P58417 271 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 IL9RQ01113 521 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 OVGP1Q12889 678 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 INAVAQ3KP66 663 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 HORMAD1Q86X24 394 aa21.58■■□□□ 1.05
HMGB3-205ENST00000455596 OR6K2Q8NGY2 324 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms