RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 PPP4R1Q8TF05 950 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 C10orf82Q8WW14 230 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 MYEOVQ96EZ4 313 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 FBXO6Q9NRD1 293 aaPredicted RBP13.85□□□□□ -0.19
CLK3-203ENST00000454830 PPARGC1AQ9UBK2 798 aaKnown RBP13.85□□□□□ -0.19
CLK3-203ENST00000454830 OGDHLQ9ULD0 1010 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 ACTL7AQ9Y615 435 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 ZFP37Q9Y6Q3 630 aaPredicted RBP13.85□□□□□ -0.19
CLK3-203ENST00000454830 TSC2P49815 1807 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 A0A0D9SEW6 157 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 CBX4O00257 560 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 TIMM44O43615 452 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 DNAJC6O75061 913 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 BPGMP07738 259 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 SERPINB3P29508 390 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 NDST2P52849 883 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 PRAMEP78395 509 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 DEFB103AP81534 67 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 IRF9Q00978 393 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 ITGA9Q13797 1035 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 GRM3Q14832 879 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 SPATA6LQ8N4H0 392 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 ELMO2Q96JJ3 720 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 TMEM248Q9NWD8 314 aa13.85□□□□□ -0.19
CLK3-203ENST00000454830 CSF2RAP15509 400 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 HOXC13P31276 330 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 LIMK2P53671 638 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 NCALDP61601 193 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 RCN2Q14257 317 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 SLC41A1Q8IVJ1 513 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 UMODL1-AS1Q8N2C9 162 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 BBS5Q8N3I7 341 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 MUC3BQ9H195 1237 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 SLC25A51Q9H1U9 297 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 TXLNGQ9NUQ3 528 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 MTRRQ9UBK8 725 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 VWA8A3KMH1 1905 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 ACSL4O60488 711 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 GJB3O75712 270 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 HAUS5O94927 633 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 C2P06681 752 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 DHRS4L1P0CG22 281 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CORO1AP31146 461 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 KPNA1P52294 538 aaPredicted RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 ZNF33AQ06730 810 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 KYAT3Q6YP21 454 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 LRRC49Q8IUZ0 686 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 C10orf107Q8IVU9 208 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 SREK1Q8WXA9 508 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 PAWRQ96IZ0 340 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 SPATA17Q96L03 361 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 MRGPRX2Q96LB1 330 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 ZBED2Q9BTP6 218 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 GSTA1P08263 222 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CCNFP41002 786 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 SERPINH1P50454 418 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 SCNN1BP51168 640 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 MNAT1P51948 309 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 AQP5P55064 265 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 TWF1Q12792 350 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 ZNF460Q14592 562 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CFAP157Q5JU67 520 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CNKSR3Q6P9H4 555 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CYS1Q717R9 158 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 PLD6Q8N2A8 252 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 ACVR1CQ8NER5 493 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 RMDN1Q96DB5 314 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 SGF29Q96ES7 293 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CYP2S1Q96SQ9 504 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 CLSTN3Q9BQT9 956 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 KLC4Q9NSK0 619 aa13.84□□□□□ -0.19
CLK3-203ENST00000454830 LAMA2P24043 3122 aaKnown RBP13.84□□□□□ -0.19
CLK3-203ENST00000454830 COCHO43405 550 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 PLIN3O60664 434 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 PRKCGP05129 697 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 CPA3P15088 417 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 LBRQ14739 615 aaKnown RBP13.83□□□□□ -0.19
CLK3-203ENST00000454830 NADSYN1Q6IA69 706 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 ZNF461Q8TAF7 563 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 ACMSDQ8TDX5 336 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 ARMCX1Q9P291 453 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 AFF4Q9UHB7 1163 aaKnown RBP13.83□□□□□ -0.19
CLK3-203ENST00000454830 TCAF1Q9Y4C2 921 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 YIPF1Q9Y548 306 aa13.83□□□□□ -0.19
CLK3-203ENST00000454830 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.83□□□□□ -0.2
CLK3-203ENST00000454830 RHOCP08134 193 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 ZNF177Q13360 481 aaPredicted RBP13.83□□□□□ -0.2
CLK3-203ENST00000454830 GALNT3Q14435 633 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 LDB1Q86U70 411 aaPredicted RBP13.83□□□□□ -0.2
CLK3-203ENST00000454830 C2orf15Q8WU43 125 aaKnown RBP13.83□□□□□ -0.2
CLK3-203ENST00000454830 ATP13A1Q9HD20 1204 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 SLC12A4Q9UP95 1085 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 DNAJC16Q9Y2G8 782 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 C2orf78A6NCI8 922 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 BNIP1Q12981 228 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 RABGAP1LQ5R372 815 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 CYB5D1Q6P9G0 228 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 POTEHQ6S545 545 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 ZNF276Q8N554 614 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 FAM136AQ96C01 138 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms