RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SP110Q9HB58 689 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NSMCE4AQ9NXX6 385 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 RNF181Q9P0P0 153 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 AAR2Q9Y312 384 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 SMIM31A0A1B0GVY4 71 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 SLCO1B7G3V0H7 640 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 DNAJA2O60884 412 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 ANXA9O76027 345 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 CCDC166P0CW27 439 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 HDCP19113 662 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 RGS2P41220 211 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 MAXP61244 160 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 PPIDQ08752 370 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 CMPK2Q5EBM0 449 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 FOXB2Q5VYV0 432 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 SPNS2Q8IVW8 549 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 RNF217Q8TC41 542 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 RTP4Q96DX8 246 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 GAD1Q99259 594 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 PKP2Q99959 881 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 TBL1YQ9BQ87 522 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NACA2Q9H009 215 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NT5MQ9NPB1 228 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 MRPL40Q9NQ50 206 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 DNAJB4Q9UDY4 337 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 VTI1BQ9UEU0 232 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 ASB3Q9Y575 518 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NCF1BA6NI72 391 aaPredicted RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 NCF1CA8MVU1 366 aaPredicted RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 BEST1O76090 585 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NCF1P14598 390 aaPredicted RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 IL10P22301 178 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 CPOXP36551 454 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 GRIA3P42263 894 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 IL1RL1Q01638 556 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 TLR1Q15399 786 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 AGAP9Q5VTM2 703 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NEPROQ6NW34 567 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 ARNTL2Q8WYA1 636 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 MRPL46Q9H2W6 279 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 ALG9Q9H6U8 611 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 NOL11Q9H8H0 719 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 PFDN4Q9NQP4 134 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 EGFL7Q9UHF1 273 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 TRHDEQ9UKU6 1024 aa12.03□□□□□ -0.48
MSH6-204ENST00000445503 PRPF19Q9UMS4 504 aaKnown RBP12.03□□□□□ -0.48
MSH6-204ENST00000445503 DAB1O75553 588 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 TIPRLO75663 272 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 RAB10P61026 200 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 NADK2Q4G0N4 442 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 FBXO48Q5FWF7 155 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 MAVSQ7Z434 540 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 RHOJQ9H4E5 214 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 MTMR10Q9NXD2 777 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 CROTQ9UKG9 612 aa12.02□□□□□ -0.48
MSH6-204ENST00000445503 SF3B1O75533 1304 aaKnown RBP eCLIP12.02□□□□□ -0.485e-8■■■■■ 37.4
MSH6-204ENST00000445503 NRP1O14786 923 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 SPTLC1O15269 473 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 NCAM2O15394 837 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 STRNO43815 780 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 CHRNA4P43681 627 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 NIPAL4Q0D2K0 466 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 TSPAN14Q8NG11 270 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 BLOC1S5Q8TDH9 187 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 LRTOMTQ8WZ04 291 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 RHOBTB2Q9BYZ6 727 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 PDE4DIPQ5VU43 2346 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 LRIG2O94898 1065 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 LRPAP1P30533 357 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 CSE1LP55060 971 aaKnown RBP12.02□□□□□ -0.49
MSH6-204ENST00000445503 MTTPP55157 894 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 TAS2R39P59534 338 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 METTL21CQ5VZV1 264 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 CLEC6AQ6EIG7 209 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 PCYOX1LQ8NBM8 494 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 LPPQ93052 612 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 LENG1Q96BZ8 264 aaPredicted RBP12.02□□□□□ -0.49
MSH6-204ENST00000445503 THAP11Q96EK4 314 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 IFT43Q96FT9 208 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 SNX27Q96L92 541 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 SLC39A3Q9BRY0 314 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 UBE2OQ9C0C9 1292 aaKnown RBP12.02□□□□□ -0.49
MSH6-204ENST00000445503 FBXO5Q9UKT4 447 aa12.02□□□□□ -0.49
MSH6-204ENST00000445503 FAM149AA5PLN7 773 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 RRN3P2A6NIE6 340 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 IL1BP01584 269 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 EDNRBP24530 442 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 HARS2P49590 506 aaKnown RBP12.01□□□□□ -0.49
MSH6-204ENST00000445503 USP46P62068 366 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 ARHGAP1Q07960 439 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 ZBTB17Q13105 803 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 TBCELQ5QJ74 424 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 PAOXQ6QHF9 649 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 DDI1Q8WTU0 396 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 LPGAT1Q92604 370 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 SPON2Q9BUD6 331 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 COLEC11Q9BWP8 271 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 OXSMQ9NWU1 459 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 MKS1Q9NXB0 559 aa12.01□□□□□ -0.49
MSH6-204ENST00000445503 MYBPHLA2RUH7 354 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms