RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 EPHB2P29323 1055 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GRIK3Q13003 919 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TWF2Q6IBS0 349 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 P2RY8Q86VZ1 359 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 EPS8L3Q8TE67 593 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 CLPTM1LQ96KA5 538 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ZNF347Q96SE7 839 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TMEM117Q9H0C3 514 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 FBXO44Q9H4M3 255 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SULT1E1P49888 294 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GRAPQ13588 217 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 MOGQ16653 247 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ZBED5Q49AG3 693 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SLC9A4Q6AI14 798 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SULT1C3Q6IMI6 304 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ISLR2Q6UXK2 745 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 CREG2Q8IUH2 290 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SAMD14Q8IZD0 417 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 IQCKQ8N0W5 287 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GRAPLQ8TC17 118 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 PPP1R16BQ96T49 567 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GPATCH1Q9BRR8 931 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 FAIM2Q9BWQ8 316 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TLR10Q9BXR5 811 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GULP1Q9UBP9 304 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 AP4B1Q9Y6B7 739 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 A0A087X0T9 212 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ANKDD1BA6NHY2 528 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 DFFAO00273 331 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 KHDRBS3O75525 346 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 IST1P53990 364 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PCID2Q5JVF3 399 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ANGEL2Q5VTE6 544 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 WDR49Q8IV35 697 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 CDRT15Q96T59 188 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 DCP1AQ9NPI6 582 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 LRRC4BQ9NT99 713 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TMEM45AQ9NWC5 275 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PCDHGB7Q9Y5F8 929 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 AQP12BA6NM10 295 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 H3BN98 237 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 CYP26A1O43174 497 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 NADKO95544 446 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 METTL18O95568 372 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 EIF2AK2P19525 551 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 TTPAP49638 278 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 RPL10AP62906 217 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 USP17L2Q6R6M4 530 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 OTOAQ7RTW8 1153 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 FAM228AQ86W67 206 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 AQP12AQ8IXF9 295 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TBX20Q9UMR3 447 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ASMTLO95671 621 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 DRD4P21917 467 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 FGL1Q08830 312 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PABPC1LQ4VXU2 614 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 RIPOR1Q6ZS17 1223 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ADGRG6Q86SQ4 1221 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 AGAP11Q8TF27 550 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 DNAJC28Q9NX36 388 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 LMTK3Q96Q04 1460 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SLC25A27O95847 323 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 S100A3P33764 101 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 BTN3A2P78410 334 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 RHEBQ15382 184 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 VWA5B1Q5TIE3 1220 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SLC9A9Q8IVB4 645 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 RC3H2Q9HBD1 1191 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 COQ6Q9Y2Z9 468 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TMX2Q9Y320 296 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 CEP170BQ9Y4F5 1589 aaPredicted RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 USP17L3A6NCW0 530 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 USP17L4A6NCW7 530 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 SOX30O94993 753 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GH1P01241 217 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 BCAMP50895 628 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 MTF1Q14872 753 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 NEDD8Q15843 81 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ZCCHC12Q6PEW1 402 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 USP17L1Q7RTZ2 530 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TCP10LQ8TDR4 215 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TSPEARQ8WU66 669 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ZNF670Q9BS34 389 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PUS7LQ9H0K6 701 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 LMTK2Q8IWU2 1503 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PLEKHA8P1O95397 391 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 PON1P27169 355 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 GTF2E2P29084 291 aaKnown RBP7.26□□□□□ -1.25
VPS53-204ENST00000437048 PSEN1P49768 467 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 KBTBD2Q8IY47 623 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 TIGD4Q8IY51 512 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 ACTR8Q9H981 624 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 INVSQ9Y283 1065 aa7.26□□□□□ -1.25
VPS53-204ENST00000437048 NR5A2O00482 541 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 EDF1O60869 148 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 GNRH1P01148 92 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 USP46P62068 366 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 RPS7P62081 194 aaKnown RBP7.25□□□□□ -1.25
VPS53-204ENST00000437048 SYTL1Q8IYJ3 562 aa7.25□□□□□ -1.25
VPS53-204ENST00000437048 IZUMO1Q8IYV9 350 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms