RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 CALML4Q96GE6 196 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 FAM118BQ9BPY3 351 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 TM2D2Q9BX73 214 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 ITPAQ9BY32 194 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 HIPK3Q9H422 1215 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 SNTG1Q9NSN8 517 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 C20orf141Q9NUB4 165 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 ZDHHC7Q9NXF8 308 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 CLIC5Q9NZA1 410 aa6.33□□□□□ -1.4
USP54-206ENST00000433394 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP54-206ENST00000433394 PABPN1LA6NDY0 278 aaKnown RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 F8W810 466 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 MATN3O15232 486 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 RNMTO43148 476 aaKnown RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 PROP1O75360 226 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TMCC1O94876 653 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 STARD3NLO95772 234 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 HOXA7P31268 230 aaPredicted RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 GDF5P43026 501 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 PTPN9P43378 593 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 ARSFP54793 590 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 YPEL5P62699 121 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 MC1RQ01726 317 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TMEM115Q12893 351 aaPredicted RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 STIM1Q13586 685 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 PPP2R5BQ15173 497 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 PROSER3Q2NL68 480 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 SLC9C1Q4G0N8 1177 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TTC39AQ5SRH9 613 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 UBAP2Q5T6F2 1119 aaKnown RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 AAGABQ6PD74 315 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 NCEH1Q6PIU2 408 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TMCO3Q6UWJ1 677 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TMC8Q8IU68 726 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TMEM217Q8N7C4 229 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 EXD3Q8N9H8 876 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 HDAC7Q8WUI4 952 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 JAKMIP2Q96AA8 810 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 SEMA4GQ9NTN9 838 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 ARPP21Q9UBL0 812 aaPredicted RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 HDAC6Q9UBN7 1215 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 TBC1D29Q9UFV1 150 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 SERGEFQ9UGK8 458 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 ZNF215Q9UL58 517 aaPredicted RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 CORO1CQ9ULV4 474 aaPredicted RBP6.32□□□□□ -1.4
USP54-206ENST00000433394 A4GNTQ9UNA3 340 aa6.32□□□□□ -1.4
USP54-206ENST00000433394 CYP2D7A0A087X1C5 515 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 A0A096LPK6 155 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 SLC22A23A1A5C7 686 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 TYW5A2RUC4 315 aaKnown RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 C17orf102A2RUQ5 167 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 RHODO00212 210 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 VILLO15195 856 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 BCAT2O15382 392 aaPredicted RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 PRPF4O43172 522 aaKnown RBP eCLIP6.31□□□□□ -1.41e-7■■■■□ 24.9
USP54-206ENST00000433394 EIF2S1P05198 315 aaKnown RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 PTPN2P17706 415 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 HOXD13P35453 343 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 RAD52P43351 418 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 GPR12P47775 334 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 GNAQP50148 359 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 SNX16P57768 344 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 ZBTB16Q05516 673 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 RPE65Q16518 533 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 KRBA2Q6ZNG9 492 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 TEX11Q8IYF3 940 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 ARL14EPQ8N8R7 260 aaPredicted RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 NSUN4Q96CB9 384 aaKnown RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 ERP27Q96DN0 273 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 FAM120BQ96EK7 910 aaKnown RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 FEM1CQ96JP0 617 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 TUBB6Q9BUF5 446 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 GATA5Q9BWX5 397 aaPredicted RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 RRP7BPQ9NSQ0 103 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 ADD3Q9UEY8 706 aaKnown RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 HAO1Q9UJM8 370 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 MTMR6Q9Y217 621 aa6.31□□□□□ -1.4
USP54-206ENST00000433394 RSF1Q96T23 1441 aaPredicted RBP6.31□□□□□ -1.4
USP54-206ENST00000433394 KAT6BQ8WYB5 2073 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 FAM237BA0A1B0GVD1 139 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 LIPT2A6NK58 231 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 USP17L23D6RBM5 183 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 MTA2O94776 668 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 IPO7O95373 1038 aaKnown RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 KRT10P13645 584 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 SLC16A2P36021 539 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 PSMB10P40306 273 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 GHRHRQ02643 423 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 CREB5Q02930 508 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 SLC10A2Q12908 348 aaPredicted RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 FHL2Q14192 279 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 FBXO43Q4G163 708 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 ZKSCAN2Q63HK3 967 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 MOB3CQ70IA8 216 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 FAM57BQ71RH2 274 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 PTF1AQ7RTS3 328 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 OR8H2Q8N162 312 aa6.3□□□□□ -1.4
USP54-206ENST00000433394 SRBD1Q8N5C6 995 aaKnown RBP6.3□□□□□ -1.4
USP54-206ENST00000433394 ZNF398Q8TD17 642 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms