RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 LRRC39Q96DD0 335 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 CATSPER2Q96P56 530 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 RAB3IPQ96QF0 476 aaPredicted RBP12.1□□□□□ -0.47
PTPRN-204ENST00000423636 FAM96AQ9H5X1 160 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 NMRAL1Q9HBL8 299 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 BPIFA1Q9NP55 256 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 TLR9Q9NR96 1032 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 PLK2Q9NYY3 685 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 IGSF9Q9P2J2 1179 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 XPR1Q9UBH6 696 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 ZNF180Q9UJW8 692 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 ARL5AQ9Y689 179 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 CDY1Q9Y6F8 540 aa12.1□□□□□ -0.47
PTPRN-204ENST00000423636 HOXC8P31273 242 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 MAGEA6P43360 314 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CDH13P55290 713 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 TBX4P57082 545 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 TAS2R39P59534 338 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 GRIK3Q13003 919 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CUL3Q13618 768 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PREPLQ4J6C6 727 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 FBXL22Q6P050 247 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 MARK2Q7KZI7 788 aaKnown RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CHSY1Q86X52 802 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 DDX50Q9BQ39 737 aaKnown RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NOL6Q9H6R4 1146 aaKnown RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 GLOD4Q9HC38 313 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SCN10AQ9Y5Y9 1956 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 TBKBP1A7MCY6 615 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SMAPO00193 183 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PPP6CO00743 305 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ZBTB14O43829 449 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CCDC22O60826 627 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 GJB5O95377 273 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 MX2P20592 715 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ARNTP27540 789 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 OR1E1P30953 314 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SERPINB6P35237 376 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SPRP35270 261 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 IDH3AP50213 366 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SPOUT1Q5T280 376 aaKnown RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 LAYNQ6UX15 382 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 C4orf50Q6ZRC1 276 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PAF1Q8N7H5 531 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 BCL7CQ8WUZ0 217 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ZCWPW1Q9H0M4 648 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ABCG8Q9H221 673 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SP110Q9HB58 689 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 TNFRSF12AQ9NP84 129 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 THAP1Q9NVV9 213 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 GTSE1Q9NYZ3 720 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 MARCH4Q9P2E8 410 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 UXTQ9UBK9 157 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PTGDR2Q9Y5Y4 395 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PTCH2Q9Y6C5 1203 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 SCN4AP35499 1836 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NCF1BA6NI72 391 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NCF1CA8MVU1 366 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 TNFRSF10BO14763 440 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 MUSKO15146 869 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 GLRA3O75311 464 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PIGNO95427 931 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NCF1P14598 390 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 GRIA4P48058 902 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CDH17Q12864 832 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 PRPSAP1Q14558 356 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ARL13AQ5H913 290 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 KCTD11Q693B1 232 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 DCLRE1AQ6PJP8 1040 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 BNIPLQ7Z465 357 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 FSTL5Q8N475 847 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NRG4Q8WWG1 115 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 WBP2Q969T9 261 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 HDAC11Q96DB2 347 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ACE2Q9BYF1 805 aaPredicted RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CSNK1G1Q9HCP0 422 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 CASS4Q9NQ75 786 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NOP53Q9NZM5 478 aaKnown RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 ZDHHC2Q9UIJ5 367 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NEU3Q9UQ49 428 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 APOBEC2Q9Y235 224 aaKnown RBP12.09□□□□□ -0.47
PTPRN-204ENST00000423636 C15orf41Q9Y2V0 281 aa12.09□□□□□ -0.47
PTPRN-204ENST00000423636 NBNO60934 754 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 SIN3BO75182 1162 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 TBX10O75333 385 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 ALDH1A2O94788 518 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 TPBGLP0DKB5 382 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 RPL9P32969 192 aaKnown RBP12.08□□□□□ -0.48
PTPRN-204ENST00000423636 PKNOX1P55347 436 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 ABCE1P61221 599 aaKnown RBP12.08□□□□□ -0.48
PTPRN-204ENST00000423636 C1orf146Q5VVC0 180 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 PM20D1Q6GTS8 502 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 RNF180Q86T96 592 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 HPS6Q86YV9 775 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 OR13C4Q8NGS5 318 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 HDAC10Q969S8 669 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 MRGPRX2Q96LB1 330 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 ABCC13Q9NSE7 274 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 MARCH2Q9P0N8 246 aa12.08□□□□□ -0.48
PTPRN-204ENST00000423636 FETUBQ9UGM5 382 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms