RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 GPC6Q9Y625 555 aaPredicted RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 CNTNAP1P78357 1384 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 ANK1P16157 1881 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 CLRN2A0PK11 232 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 SAC3D1A6NKF1 404 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 ZNF839A8K0R7 811 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TMEM233B4DJY2 109 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 DYNC1LI2O43237 492 aaPredicted RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 PFKMP08237 780 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 KRT19P08727 400 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 VDRP11473 427 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 ZNF182P17025 639 aaPredicted RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 TFE3P19532 575 aaPredicted RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 SDC4P31431 198 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 EIF2B2P49770 351 aaKnown RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 PRKAA2P54646 552 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TNK2Q07912 1038 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 GRSF1Q12849 480 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP54-204ENST00000422491 CSPG4P5Q96PW8 444 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 LGMNQ99538 433 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TRPC7Q9HCX4 862 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 GID8Q9NWU2 228 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TMEM181Q9P2C4 612 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 SFMBT1Q9UHJ3 866 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 ZCWPW2A0A1B0GU75 182 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 CFAP99D6REC4 459 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 SEC24DO94855 1032 aaPredicted RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 PSMB4P28070 264 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 STX5Q13190 355 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 DGKZQ13574 1117 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 SNRNP48Q6IEG0 339 aaKnown RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 C8orf82Q6P1X6 216 aaPredicted RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 CAMK1DQ8IU85 385 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 COLGALT2Q8IYK4 626 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 SIX6OS1Q8N1H7 587 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 ZNF669Q96BR6 464 aaPredicted RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 CNDP2Q96KP4 475 aaKnown RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 SNX27Q96L92 541 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 HEXIM2Q96MH2 286 aaKnown RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 FTHL17Q9BXU8 183 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 DNAI2Q9GZS0 605 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 TASP1Q9H6P5 420 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 VRTNQ9H8Y1 702 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 SRCAPQ6ZRS2 3230 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 CCDC162PA2VCL2 907 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 HACD1B0YJ81 288 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 TARM1B6A8C7 271 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 RNF103O00237 685 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 HDCP19113 662 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 OLIG2Q13516 323 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 DGKDQ16760 1214 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 MAP1SQ66K74 1059 aaPredicted RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 KCTD8Q6ZWB6 473 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 DPH6Q7L8W6 267 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 TMEM135Q86UB9 458 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 ZBTB46Q86UZ6 589 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 ZC3H7AQ8IWR0 971 aaKnown RBP10.84□□□□□ -0.67
USP54-204ENST00000422491 C1orf127Q8N9H9 656 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 ANKRD52Q8NB46 1076 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 PCYOX1LQ8NBM8 494 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.84□□□□□ -0.67
USP54-204ENST00000422491 CXorf38Q8TB03 319 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 STYXQ8WUJ0 223 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 CEP41Q9BYV8 373 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 ADAMTS10Q9H324 1103 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 GIN1Q9NXP7 522 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 GGA3Q9NZ52 723 aa10.84□□□□□ -0.67
USP54-204ENST00000422491 KRBA1A5PL33 1030 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 TIMM44O43615 452 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 CNOT3O75175 753 aaKnown RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 CLIC3O95833 236 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 ATP6V1B2P21281 511 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 ATXN1P54253 815 aaKnown RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 GNA12Q03113 381 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 FSTL1Q12841 308 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 TRAF2Q12933 501 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 NME3Q13232 169 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 FRG1Q14331 258 aaKnown RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 SAMD4BQ5PRF9 694 aaKnown RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 DHFR2Q86XF0 187 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 OR2T34Q8NGX1 318 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 OR2T3Q8NH03 318 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 CASP10Q92851 521 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 FBXL20Q96IG2 436 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 VPS39Q96JC1 886 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 FEM1CQ96JP0 617 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 KCTD15Q96SI1 283 aaPredicted RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 NIFKQ9BYG3 293 aaKnown RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 LRRC40Q9H9A6 602 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 ZNF302Q9NR11 478 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 CCM2LQ9NUG4 571 aaPredicted RBP10.83□□□□□ -0.68
USP54-204ENST00000422491 HACD3Q9P035 362 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 TSPAN16Q9UKR8 245 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 TCAF1Q9Y4C2 921 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 RIPK3Q9Y572 518 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 USP3Q9Y6I4 520 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 GOLGA8TH3BQL2 631 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 DDHD2O94830 711 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 CPNE6O95741 557 aa10.83□□□□□ -0.68
USP54-204ENST00000422491 OXSR1O95747 527 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms