RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 HLA-DPA1P20036 260 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 PSMB4P28070 264 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 ST13P50502 369 aaKnown RBP8.65□□□□□ -1.03
SYNE1-211ENST00000413186 MRPS35P82673 323 aaKnown RBP8.65□□□□□ -1.03
SYNE1-211ENST00000413186 NAB1Q13506 487 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 PDGFRLQ15198 375 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 PDPK2PQ6A1A2 396 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 TXNDC8Q6A555 127 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 GPR65Q8IYL9 337 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 OR8D1Q8WZ84 308 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 ULK4Q96C45 1275 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 ABHD8Q96I13 439 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 MLPHQ9BV36 600 aaPredicted RBP8.65□□□□□ -1.03
SYNE1-211ENST00000413186 SLC13A1Q9BZW2 595 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 CRISPLD2Q9H0B8 497 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 CDC42EP4Q9H3Q1 356 aaKnown RBP8.65□□□□□ -1.03
SYNE1-211ENST00000413186 CCSER2Q9H7U1 834 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 ETNK1Q9HBU6 452 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 GLOD4Q9HC38 313 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 PKD2L2Q9NZM6 624 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 STK38LQ9Y2H1 464 aa8.65□□□□□ -1.03
SYNE1-211ENST00000413186 PDE2AO00408 941 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 FGF1P05230 155 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 VCLP18206 1134 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CHRM3P20309 590 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 HSD3B2P26439 372 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 RABGGTBP53611 331 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 GUCY1A3Q02108 690 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 HNRNPDQ14103 355 aaKnown RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 POU6F1Q14863 301 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 C1orf94Q6P1W5 598 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 RFWD3Q6PCD5 774 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 DRICH1Q6PGQ1 229 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ACDQ96AP0 544 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ATXN7L3BQ96GX2 97 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 NECTIN4Q96NY8 510 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 QKIQ96PU8 341 aaKnown RBP eCLIP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 TMEM209Q96SK2 561 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ZDHHC6Q9H6R6 413 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 PIGVQ9NUD9 493 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 APOA4P06727 396 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CHN1P15882 459 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CD86P42081 329 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 GBE1Q04446 702 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 IL10RBQ08334 325 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 MTM1Q13496 603 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 PCID2Q5JVF3 399 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 TRIM68Q6AZZ1 485 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 TRIM67Q6ZTA4 783 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 TRMT11Q7Z4G4 463 aaKnown RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 GLT6D1Q7Z4J2 308 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SLC26A11Q86WA9 606 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CHPFQ8IZ52 775 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 PGM2Q96G03 612 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 LRRC37BQ96QE4 947 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 TRMT6Q9UJA5 497 aaKnown RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 GRID1Q9ULK0 1009 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 DOLKQ9UPQ8 538 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ZFP37Q9Y6Q3 630 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 EVPLQ92817 2033 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CCDC22O60826 627 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CNPP09543 421 aaKnown RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ELK3P41970 407 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 GPR15P49685 360 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 DAB2P98082 770 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SLC12A1Q13621 1099 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 RFTN1Q14699 578 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 LONRF1Q17RB8 773 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ATAD3BQ5T9A4 648 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SLC8B1Q6J4K2 584 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 HFE2Q6ZVN8 426 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 GRASPQ7Z6J2 395 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SRLQ86TD4 932 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SETD3Q86TU7 594 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SKA1Q96BD8 255 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SH3GL3Q99963 347 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 NSUN3Q9H649 340 aaKnown RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 YY1AP1Q9H869 796 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ZDHHC7Q9NXF8 308 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 PLK2Q9NYY3 685 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 WDR27A2RRH5 827 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ZNF487B1APH4 448 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 PER2O15055 1255 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 MAP3K13O43283 966 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 MFSD11O43934 449 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 KRT75O95678 551 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 PTPN7P35236 360 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CAP1Q01518 475 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 CDK18Q07002 472 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SMAD1Q15797 465 aaKnown RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 FAM83EQ2M2I3 478 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 ZNF572Q7Z3I7 529 aaPredicted RBP8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SPATA21Q7Z572 469 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 LUZP2Q86TE4 346 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 RNF135Q8IUD6 432 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 BPIFB1Q8TDL5 484 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 HERVK_113Q902F9 699 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SH3KBP1Q96B97 665 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 SLC2A13Q96QE2 648 aa8.64□□□□□ -1.03
SYNE1-211ENST00000413186 COQ7Q99807 217 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms