RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PDCD2LQ9BRP1 358 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 MTG1Q9BT17 334 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 KIFC1Q9BW19 673 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF180Q9UJW8 692 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PCDHB1Q9Y5F3 818 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 H0YJX3 145 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 FSCN2O14926 492 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ALOX15BO15296 676 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PRMT3O60678 531 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 AKAP3O75969 853 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SERPINA1P01009 418 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 HIST1H2ABP04908 130 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 IL1R1P14778 569 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ALOX12P18054 663 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TPSB2P20231 275 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ATP4AP20648 1035 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 RPL9P32969 192 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PSME3P61289 254 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 BCL2L1Q07817 233 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TPSAB1Q15661 275 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CBWD3Q5JTY5 395 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 DGKKQ5KSL6 1271 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CBWD5Q5RIA9 395 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 HIST3H2AQ7L7L0 130 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CREG2Q8IUH2 290 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SVOPLQ8N434 492 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TRPV1Q8NER1 839 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF671Q8TAW3 534 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SNRNP27Q8WVK2 155 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 HIST1H2ACQ93077 130 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LENG1Q96BZ8 264 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 COX4I2Q96KJ9 171 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 B3GALT6Q96L58 329 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 HGH1Q9BTY7 390 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C1QTNF1Q9BXJ1 281 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C3orf14Q9HBI5 128 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ETNK2Q9NVF9 386 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CCDC59Q9P031 241 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TRPC4Q9UBN4 977 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SNX7Q9UNH6 387 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 MAN2B2Q9Y2E5 1009 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C2CD2Q9Y426 696 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LOC110117498-PIK3R3F6TDL0 507 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 IDH3BO43837 385 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LRIG2O94898 1065 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LYPLA2O95372 231 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 FGF1P05230 155 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 GPIP06744 558 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 NFICP08651 508 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PCNAP12004 261 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 FGFR2P21802 821 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 POU1F1P28069 291 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 MLH1P40692 756 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ITGB3BPQ13352 177 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PDK3Q15120 406 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SAMD14Q8IZD0 417 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 POMGNT2Q8NAT1 580 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SRFBP1Q8NEF9 429 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PIK3R3Q92569 461 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 THRSPQ92748 146 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C7orf26Q96N11 449 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TAAR1Q96RJ0 339 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ACOX2Q99424 681 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TMEM121Q9BTD3 319 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SENP6Q9GZR1 1112 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 MYOZ2Q9NPC6 264 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 DNAJC28Q9NX36 388 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF624Q9P2J8 865 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 GMPPBQ9Y5P6 360 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CHP2O43745 196 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 RARAP10276 462 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 EPB42P16452 691 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 KDELR1P24390 212 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ALDH5A1P51649 535 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CACNB3P54284 484 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CDH4P55283 916 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CDK18Q07002 472 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LAPTM5Q13571 262 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 NTRK3Q16288 839 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 HKDC1Q2TB90 917 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ANGEL2Q5VTE6 544 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 BEND7Q8N7W2 519 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TAS1R2Q8TE23 839 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 NT5MQ9NPB1 228 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 THUMPD1Q9NXG2 353 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ABI2Q9NYB9 513 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PLK2Q9NYY3 685 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CALML5Q9NZT1 146 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 RNF181Q9P0P0 153 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 UPB1Q9UBR1 384 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PCDHB12Q9Y5F1 795 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 KDM6BO15054 1643 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 F5H423 210 aaPredicted RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 MATN2O00339 956 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CCNT2O60583 730 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 CD44P16070 742 aaKnown RBP6.16□□□□□ -1.42
SCN1A-203ENST00000409050 GSTT1P30711 240 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF554Q86TJ5 538 aa6.16□□□□□ -1.42
SCN1A-203ENST00000409050 ACOT1Q86TX2 421 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms