RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CORO1CQ9ULV4 474 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TMCO1Q9UM00 188 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RBMX2Q9Y388 322 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ABCA9Q8IUA7 1624 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RCCD1A6NED2 376 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 EFCAB10A6NFE3 127 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 CSDE1O75534 798 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 STX11O75558 287 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 HPGDP15428 266 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ADSSP30520 456 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 AXLP30530 894 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 CYP2C18P33260 490 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 GTF2A2P52657 109 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 QPRTQ15274 297 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 CWF19L1Q69YN2 538 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PIWIL4Q7Z3Z4 852 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 GLT6D1Q7Z4J2 308 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 TTC7BQ86TV6 843 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SFRP1Q8N474 314 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 MBOAT7Q96N66 472 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ELOVL4Q9GZR5 314 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 PTPRHQ9HD43 1115 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 MTF2Q9Y483 593 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 FSCN2O14926 492 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 EPN2O95208 641 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SERPINA6P08185 405 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 OR56A5P0C7T3 313 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 NOS2P35228 1153 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 HPCAL1P37235 193 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 GUCA1AP43080 201 aaPredicted RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 XIAPP98170 497 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 FGD3Q5JSP0 725 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ABRAXAS1Q6UWZ7 409 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 BBS12Q6ZW61 710 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 POLNQ7Z5Q5 900 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 AMER2Q8N7J2 671 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 REPS2Q8NFH8 660 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 OR7A2PQ8NGA2 310 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RP9Q8TA86 221 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 STAG3L4Q8TBR4 150 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ANKRD49Q8WVL7 239 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SHC3Q92529 594 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 ZCCHC2Q9C0B9 1178 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SYNDIG1Q9H7V2 258 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RSL24D1Q9UHA3 163 aaKnown RBP10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 CHKBQ9Y259 395 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 SNX8Q9Y5X2 465 aa10.38□□□□□ -0.75
LIMCH1-203ENST00000396595 RBAK-RBAKDNI3L0D1 243 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 IFRD1O00458 451 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 HDAC3O15379 428 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SNAP91O60641 907 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 KPNA6O60684 536 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 USP12O75317 370 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 KCNH1O95259 989 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 LTFP02788 710 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 FYNP06241 537 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ITGB6P18564 788 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ACAT1P24752 427 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 GRK4P32298 578 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 GSSP48637 474 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ALDH9A1P49189 494 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PRR23BQ6ZRT6 265 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 MTSS1LQ765P7 747 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PHACTR4Q8IZ21 702 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 WNT8BQ93098 351 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PHACTR1Q9C0D0 580 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 TMEM134Q9H6X4 195 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SPAG4Q9NPE6 437 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 CUEDC1Q9NWM3 386 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ATPIF1Q9UII2 106 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SYNPO2Q9UMS6 1093 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 MAPRE3Q9UPY8 281 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 CASTOR2A6NHX0 329 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 EPHB6O15197 1021 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 TSPAN19P0C672 248 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 CLCN5P51795 746 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF143P52747 638 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 IL2P60568 153 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ARF5P84085 180 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ACSM2AQ08AH3 577 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ACSM2BQ68CK6 577 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 IL27RAQ6UWB1 636 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SLC30A10Q6XR72 485 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ZNF410Q86VK4 478 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 LRRC17Q8N6Y2 441 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 MAGEE2Q8TD90 523 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 ZC3H10Q96K80 434 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PLEKHG4BQ96PX9 1271 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 KCNMB3Q9NPA1 279 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 LEF1Q9UJU2 399 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 C3orf18Q9UK00 162 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 PRPF19Q9UMS4 504 aaKnown RBP10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SPATA31A5Q5VU36 1347 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 SPATA31A7Q8IWB4 1347 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 FGFR3P22607 806 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 GRIA3P42263 894 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 MMP13P45452 471 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 BNIP2Q12982 314 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 GRIK4Q16099 956 aa10.37□□□□□ -0.75
LIMCH1-203ENST00000396595 INTS11Q5TA45 600 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms