RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 HNRNPABQ99729 332 aaKnown RBP16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 SMOQ99835 787 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 NAT9Q9BTE0 207 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 STK39Q9UEW8 545 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 MATN2O00339 956 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 ERCC2P18074 760 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 CACNB2Q08289 660 aaPredicted RBP16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 DPYSQ14117 519 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 CNGA3Q16281 694 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 C6orf52Q5T4I8 152 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 SDCCAG8Q86SQ7 713 aaPredicted RBP16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 TMEM135Q86UB9 458 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 TRPV1Q8NER1 839 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 BHLHE22Q8NFJ8 381 aaPredicted RBP16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 FAM96AQ9H5X1 160 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 SUDS3Q9H7L9 328 aaPredicted RBP16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 PSMD13Q9UNM6 376 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 SHROOM3Q8TF72 1996 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 GRID2O43424 1007 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 CRTAMO95727 393 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 NOS2P35228 1153 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 TPI1P60174 286 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 LSAMPQ13449 338 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 TIGD5Q53EQ6 642 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 FAM35AQ86V20 835 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 TMEM151AQ8N4L1 468 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 KCTD4Q8WVF5 259 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 ISL2Q96A47 359 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 TMEM209Q96SK2 561 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 OXSMQ9NWU1 459 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 IGSF9Q9P2J2 1179 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 NOD1Q9Y239 953 aa16.51■□□□□ 0.23
NKX3-1-201ENST00000380871 HAS3O00219 553 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 DCLK1O15075 740 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 AP2A1O95782 977 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 CTGFP29279 349 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 ZNF423Q2M1K9 1284 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 ARMC3Q5W041 872 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 IYDQ6PHW0 289 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 KYQ8NBH2 561 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 KLHL32Q96NJ5 620 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 APBA2Q99767 749 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 OMDQ99983 421 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 KATNAL1Q9BW62 490 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 DNAI2Q9GZS0 605 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 ILKAPQ9H0C8 392 aaPredicted RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 GABRQQ9UN88 632 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 ARL5CA6NH57 179 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 TFAP2AP05549 437 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 PIM1P11309 404 aaPredicted RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 CDKL1Q00532 357 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 PSTKQ8IV42 348 aaKnown RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 ZSCAN18Q8TBC5 510 aaPredicted RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 NPAS2Q99743 824 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 FERMT1Q9BQL6 677 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 GRIP2Q9C0E4 1043 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 BFARQ9NZS9 450 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 CHRNA1P02708 482 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 OR4Q2P0C623 313 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 TFEBP19484 476 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 NFKB1P19838 968 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 CRHR2Q13324 411 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 SLC5A9Q2M3M2 681 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 PIGGQ5H8A4 983 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 MAP3K21Q5TCX8 1036 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 SEL1L3Q68CR1 1132 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 SMYD5Q6GMV2 418 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 BNC2Q6ZN30 1099 aaPredicted RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 RBM44Q6ZP01 1051 aaKnown RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 SNX31Q8N9S9 440 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 TMA16Q96EY4 203 aaKnown RBP16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 MPP4Q96JB8 637 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 SCYL1Q96KG9 808 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 PKP2Q99959 881 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 CCDC28BQ9BUN5 200 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 RIMS3Q9UJD0 308 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 FIS1Q9Y3D6 152 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 AP4B1Q9Y6B7 739 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 COMMD3-BMI1R4GMX3 469 aa16.5■□□□□ 0.23
NKX3-1-201ENST00000380871 ZSWIM8A7E2V4 1837 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 MOCS2O96007 188 aaPredicted RBP16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 AKR1A1P14550 325 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 PRDX6P30041 224 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 SDHAF4Q5VUM1 108 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 SCAMP5Q8TAC9 235 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 PPP1R10Q96QC0 940 aaKnown RBP16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 RGSL1A5PLK6 1076 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 CCDC160A6NGH7 325 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 VILLO15195 856 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 HDAC3O15379 428 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 FYNP06241 537 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 THRAP10827 490 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 WARSP23381 471 aaKnown RBP16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 ADRA1BP35368 520 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 XIAPP98170 497 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 DYNC1I2Q13409 638 aaKnown RBP16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 CYLC2Q14093 348 aaPredicted RBP16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 AGMOQ6ZNB7 445 aa16.49■□□□□ 0.23
NKX3-1-201ENST00000380871 TOP6BLQ8N6T0 577 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms