RNA–Protein interactions for RNA: ENST00000377107.6

USP11-204, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP11, Length 3,515 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-204ENST00000377107 OR51F1A6NGY5 319 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 TOMM70O94826 608 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 THRAP10827 490 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 XRCC1P18887 633 aaPredicted RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 CASP2P42575 452 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 LHX1P48742 406 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 PAPOLAP51003 745 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 THOP1P52888 689 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 CRYBB1P53674 252 aaPredicted RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 CDH13P55290 713 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 PPIDQ08752 370 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 HABP4Q5JVS0 413 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 CNSTQ6PJW8 725 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 BNC2Q6ZN30 1099 aaPredicted RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 SPATA2LQ8IUW3 424 aaPredicted RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 DSELQ8IZU8 1212 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 FBXW8Q8N3Y1 598 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 EMID1Q96A84 441 aaPredicted RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 NMD3Q96D46 503 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 CNGB3Q9NQW8 809 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 TNS1Q9HBL0 1735 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 MYADML2A6NDP7 307 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 SUPT7LO94864 414 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 FBXO21O94952 628 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 PRAMEP78395 509 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 NRF1Q16656 503 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 MAP7D1Q3KQU3 841 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 RBM20Q5T481 1227 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 SERPINI1Q99574 410 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 SLC39A8Q9C0K1 460 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 FAM96AQ9H5X1 160 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 TMLHEQ9NVH6 421 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 DNAJC28Q9NX36 388 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 MKS1Q9NXB0 559 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 TPST1O60507 370 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 NPY2RP49146 381 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 PGFP49763 221 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 CPT1AP50416 773 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 RALGDSQ12967 914 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 SLC12A1Q13621 1099 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 DDR2Q16832 855 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 AGKQ53H12 422 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 USP50Q70EL3 339 aaPredicted RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 TMEM135Q86UB9 458 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 ZC3HC1Q86WB0 502 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 PTPN18Q99952 460 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 VCX3BQ9H321 246 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 SPON1Q9HCB6 807 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 TRPC7Q9HCX4 862 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 PRM3Q9NNZ6 103 aa13.1□□□□□ -0.31
USP11-204ENST00000377107 EIF2B3Q9NR50 452 aaKnown RBP13.1□□□□□ -0.31
USP11-204ENST00000377107 TNPO2O14787 897 aaKnown RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 NCAM2O15394 837 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 DLX3O60479 287 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 F9P00740 461 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 KCNE1P15382 129 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 SLC1A2P43004 574 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CDK7P50613 346 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 PTPRCAPQ14761 206 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 INSCQ1MX18 579 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 PITRM1Q5JRX3 1037 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 LIPMQ5VYY2 423 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 OVOS1Q6IE37 1185 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 LRRC8EQ6NSJ5 796 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 EPGNQ6UW88 154 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CIR1Q86X95 450 aaPredicted RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 PPP2R3CQ969Q6 453 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 BRD8Q9H0E9 1235 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 WDR41Q9HAD4 459 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 GPAMQ9HCL2 828 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CASS4Q9NQ75 786 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 SLC38A7Q9NVC3 462 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 TRHDEQ9UKU6 1024 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 TRIP12Q14669 1992 aaPredicted RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 TSPAN3O60637 253 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 SOAT2O75908 522 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CCDC166P0CW27 439 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 AXLP30530 894 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 COG7P83436 770 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 PDAP1Q13442 181 aaKnown RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 KIF19Q2TAC6 998 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP11-204ENST00000377107 ZNF789Q5FWF6 425 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CLEC6AQ6EIG7 209 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 BLOC1S5Q8TDH9 187 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 HDAC11Q96DB2 347 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 OXSMQ9NWU1 459 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CLIC5Q9NZA1 410 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 RAP2CQ9Y3L5 183 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 KCNU1A8MYU2 1149 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 SCAMP3O14828 347 aaKnown RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 LIN7AO14910 233 aaPredicted RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 IL1BP01584 269 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 ITGB1P05556 798 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 CD86P42081 329 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 ALDH1A3P47895 512 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 HARS2P49590 506 aaKnown RBP13.09□□□□□ -0.31
USP11-204ENST00000377107 EFEMP1Q12805 493 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 GRB14Q14449 540 aa13.09□□□□□ -0.31
USP11-204ENST00000377107 NEPROQ6NW34 567 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms