RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 CHRAC1Q9NRG0 131 aa21.44■■□□□ 1.02
UPF3A-202ENST00000375299 MAGEB16A2A368 324 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 E7ENX8 843 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 SDHDO14521 159 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 DLX3O60479 287 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 USP2O75604 605 aaPredicted RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 NELFEP18615 380 aaKnown RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 OTUD1Q5VV17 481 aaPredicted RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 ZNF554Q86TJ5 538 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 ZC3HC1Q86WB0 502 aaKnown RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 MYO1HQ8N1T3 1032 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 RHOJQ9H4E5 214 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 OLAHQ9NV23 265 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 LTBP3Q9NS15 1303 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 TRPC5OSA6NMA1 111 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 TMEM233B4DJY2 109 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 GOLGA8TH3BQL2 631 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 EEF2KO00418 725 aaKnown RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 DCLK1O15075 740 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 SLC35E2BP0CK96 405 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 CYP2B6P20813 491 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 AVPR1AP37288 418 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 NPY2RP49146 381 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 NDST2P52849 883 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 PGGT1BP53609 377 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 PDAP1Q13442 181 aaKnown RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 SLC12A1Q13621 1099 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 VGLL4Q14135 290 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 MTX3Q5HYI7 312 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 TRIM67Q6ZTA4 783 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 PELI3Q8N2H9 469 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 LRRC43Q8N309 656 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 HM13Q8TCT9 377 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 GRIN3AQ8TCU5 1115 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 SLCO4A1Q96BD0 722 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 HSPBAP1Q96EW2 488 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 MLPHQ9BV36 600 aaPredicted RBP21.43■■□□□ 1.02
UPF3A-202ENST00000375299 NSMCE4AQ9NXX6 385 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 XPR1Q9UBH6 696 aa21.43■■□□□ 1.02
UPF3A-202ENST00000375299 ERI2A8K979 691 aaKnown RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 TRIM24O15164 1050 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 MAGEB3O15480 346 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 ZNF189O75820 626 aaPredicted RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 PITX1P78337 314 aaPredicted RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 TRAP1Q12931 704 aaKnown RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 DGKDQ16760 1214 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 HERC6Q8IVU3 1022 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 CENPLQ8N0S6 344 aaPredicted RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 DUS3LQ96G46 650 aaKnown RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 UHRF1Q96T88 793 aaPredicted RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 SLC29A1Q99808 456 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 R3HDMLQ9H3Y0 253 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 IPO11Q9UI26 975 aaKnown RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 PPP2R3BQ9Y5P8 575 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 HEMK1Q9Y5R4 338 aaPredicted RBP21.42■■□□□ 1.02
UPF3A-202ENST00000375299 SNX13Q9Y5W8 968 aa21.42■■□□□ 1.02
UPF3A-202ENST00000375299 SYNJ2BP-COX16A0A087WUM0 186 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 HEATR9A2RTY3 570 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 CYP2C9P11712 490 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 NMBRP28336 390 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 CROCCP3Q8IVE0 287 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 BBS5Q8N3I7 341 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 LPGAT1Q92604 370 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 FAM149B1Q96BN6 582 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 HSFY1Q96LI6 401 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 ANKRD60Q9BZ19 345 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 COX16Q9P0S2 106 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 SARDHQ9UL12 918 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 FAF1Q9UNN5 650 aaPredicted RBP21.41■■□□□ 1.02
UPF3A-202ENST00000375299 TCRBV3S1A0A5B6 114 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 ZBTB24O43167 697 aaPredicted RBP21.41■■□□□ 1.02
UPF3A-202ENST00000375299 NPHS1O60500 1241 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 DAB1O75553 588 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 BMP10O95393 424 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 COL6A2P12110 1019 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 YBX3P16989 372 aaKnown RBP eCLIP21.41■■□□□ 1.02
UPF3A-202ENST00000375299 SLC7A1P30825 629 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 STX5Q13190 355 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 LRP8Q14114 963 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 FIBCD1Q8N539 461 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 CCNYL1Q8N7R7 359 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 COPS5Q92905 334 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 APBA2Q99767 749 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 APOL2Q9BQE5 337 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 GBA3Q9H227 469 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 CXCL16Q9H2A7 254 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 AKT3Q9Y243 479 aa21.41■■□□□ 1.02
UPF3A-202ENST00000375299 FAM155AB1AL88 458 aaPredicted RBP21.4■■□□□ 1.02
UPF3A-202ENST00000375299 SOCS7O14512 581 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 HTRA2O43464 458 aaPredicted RBP21.4■■□□□ 1.02
UPF3A-202ENST00000375299 HNRNPCP07910 306 aaKnown RBP eCLIP21.4■■□□□ 1.02
UPF3A-202ENST00000375299 DNAJB1P25685 340 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 BAG6P46379 1132 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 MAPRE2Q15555 327 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 DCAF6Q58WW2 860 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 TSTD2Q5T7W7 516 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 REP15Q6BDI9 236 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 HMBOX1Q6NT76 420 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 SLC41A1Q8IVJ1 513 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 NDRG1Q92597 394 aaKnown RBP21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms