RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 NEFHP12036 1026 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 MYL4P12829 197 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CALB2P22676 271 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 SLC6A4P31645 630 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 GARSP41250 739 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 PPIDQ08752 370 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 RAB30Q15771 203 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 ALFQ53S48 1182 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 FBXL22Q6P050 247 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 ZNF449Q6P9G9 518 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CCDC110Q8TBZ0 833 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 MZB1Q8WU39 189 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 DEPDC1BQ8WUY9 529 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 SLC7A6OSQ96CW6 309 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 P2RY11Q96G91 374 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CELF6Q96J87 481 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 ATXN3LQ9H3M9 355 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 RNPEPL1Q9HAU8 725 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 RAB6BQ9NRW1 208 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 DNMT3BQ9UBC3 853 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 MTO1Q9Y2Z2 717 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 XIRP2A4UGR9 3374 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 EYSQ5T1H1 3165 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CHD5Q8TDI0 1954 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 IGLV3-10A0A075B6K4 115 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 A0A0A0MRY4 1105 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 DFFAO00273 331 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 OPHN1O60890 802 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 T-ENOLP0DO92 83 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 TACR2P21452 398 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CORO1AP31146 461 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 NTHL1P78549 312 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 GAD2Q05329 585 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 ZNF33AQ06730 810 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 EFTUD2Q15029 972 aaKnown RBP eCLIP13.39□□□□□ -0.272e-7■■■■□ 23.4
SQSTM1-201ENST00000360718 LGSNQ5TDP6 509 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 RFWD3Q6PCD5 774 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 POTEHQ6S545 545 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 CIR1Q86X95 450 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 DENND1CQ8IV53 801 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 ATPAF2Q8N5M1 289 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 VN1R2Q8NFZ6 395 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 SPATA13Q96N96 652 aa13.39□□□□□ -0.27
SQSTM1-201ENST00000360718 TRAV19A0A0A6YYK7 116 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 WDR91A4D1P6 747 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 RNF103O00237 685 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CCDC22O60826 627 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 XYLBO75191 536 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 MOSPD3O75425 235 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TMEM63AO94886 807 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CKMP06732 381 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 HNRNPA1P09651 372 aaKnown RBP eCLIP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 PTPN2P17706 415 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 HOXA9P31269 272 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CBLBQ13191 982 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 SLC5A9Q2M3M2 681 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 RABGAP1LQ5R372 815 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ANKRD20A2Q5SQ80 823 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ANKRD20A1Q5TYW2 823 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ANKRD20A3Q5VUR7 823 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 LRRC49Q8IUZ0 686 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ARHGAP12Q8IWW6 846 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 LGI2Q8N0V4 545 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 FAM13CQ8NE31 585 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CFAP61Q8NHU2 1237 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 WDR83Q9BRX9 315 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TSSK1BQ9BXA7 367 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 SLC28A3Q9HAS3 691 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TMEM248Q9NWD8 314 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CHMP2BQ9UQN3 213 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 DRGXA6NNA5 263 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TRDMT1O14717 391 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CHADO15335 359 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 GREM1O60565 184 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 PFKLP17858 780 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 FDFT1P37268 417 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ELK3P41970 407 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 NDST2P52849 883 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ARFIP2P53365 341 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 SMAD3P84022 425 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ARHGAP36Q6ZRI8 547 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TFAP2DQ7Z6R9 452 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CLNKQ7Z7G1 428 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 MTDHQ86UE4 582 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TRIM42Q8IWZ5 723 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 SHKBP1Q8TBC3 707 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 SLC44A1Q8WWI5 657 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ZNF707Q96C28 371 aaPredicted RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 APOPT1Q96IL0 206 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 VAT1Q99536 393 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 CEP41Q9BYV8 373 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 RETREG1Q9H6L5 497 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 NOL6Q9H6R4 1146 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 TLE6Q9H808 572 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 ZNF212Q9UDV6 495 aa13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 LSM7Q9UK45 103 aaKnown RBP13.38□□□□□ -0.27
SQSTM1-201ENST00000360718 C2orf16Q68DN1 1984 aa13.37□□□□□ -0.27
SQSTM1-201ENST00000360718 TCRBV7S3A2A0A539 114 aa13.37□□□□□ -0.27
SQSTM1-201ENST00000360718 GOLGA8RI6L899 631 aa13.37□□□□□ -0.27
SQSTM1-201ENST00000360718 CCNCP24863 283 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms