RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NOL6Q9H6R4 1146 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 SCML2Q9UQR0 700 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 RUVBL2Q9Y230 463 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 WASH4PA8MWX3 477 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 TK2O00142 265 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 AVPR1AP37288 418 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 TM4SF4P48230 202 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 MPP1Q00013 466 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 NAA25Q14CX7 972 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 DDR2Q16832 855 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 UGP2Q16851 508 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 SNX30Q5VWJ9 437 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 LRRC49Q8IUZ0 686 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC41A1Q8IVJ1 513 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 KIRREL3Q8IZU9 778 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 PTCD2Q8WV60 388 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 MOCOSQ96EN8 888 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC39A13Q96H72 371 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 PANX3Q96QZ0 392 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 MRM3Q9HC36 420 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 IPO11Q9UI26 975 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 MID2Q9UJV3 735 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 A0A088AWK7 358 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 NCF2P19878 526 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 VHLP40337 213 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 GPR15P49685 360 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC25A3Q00325 362 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC12A1Q13621 1099 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 CNGA3Q16281 694 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 TRMT5Q32P41 509 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC9B1Q4ZJI4 515 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 CMPK2Q5EBM0 449 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 CLLU1OSQ5K130 101 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 RIPOR1Q6ZS17 1223 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 KDELC2Q7Z4H8 507 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 LCA5Q86VQ0 697 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 MFSD6LQ8IWD5 586 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 CENPLQ8N0S6 344 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 NUP93Q8N1F7 819 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 TDRD5Q8NAT2 981 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 MAPK15Q8TD08 544 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 KCTD4Q8WVF5 259 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 FSD1LQ9BXM9 530 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 ATXN3LQ9H3M9 355 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 BATF3Q9NR55 127 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 TREX1Q9NSU2 369 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 TLR6Q9Y2C9 796 aa21.11■□□□□ 0.97
CCDC88B-203ENST00000359902 CIB2O75838 187 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 EOMESO95936 686 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 PEX11BO96011 259 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 PRKAR2AP13861 404 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 COPAP53621 1224 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 CAP1Q01518 475 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 CFAP157Q5JU67 520 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 DCP1BQ8IZD4 617 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 PCSK9Q8NBP7 692 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 TRPV6Q9H1D0 765 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 MAN1C1Q9NR34 630 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 NMRK1Q9NWW6 199 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 CABYRO75952 493 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 CHRNGP07510 517 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 COL6A2P12110 1019 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 ATP6V1C1P21283 382 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 CHRNA4P43681 627 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 GLRBP48167 497 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 ACTR3P61158 418 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 LIPMQ5VYY2 423 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 MSANTD2Q6P1R3 559 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 CEP97Q8IW35 865 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 COLGALT2Q8IYK4 626 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 PHTF2Q8N3S3 785 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 DNAJC9Q8WXX5 260 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 ZNF333Q96JL9 665 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 TSNARE1Q96NA8 513 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 DRC3Q9H069 523 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 ILKAPQ9H0C8 392 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 ACSS2Q9NR19 701 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 ACOT9Q9Y305 439 aa21.1■□□□□ 0.97
CCDC88B-203ENST00000359902 TARM1B6A8C7 271 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 NVLO15381 856 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 POLD2P49005 469 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 NOMO2Q5JPE7 1267 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC24A5Q71RS6 500 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 ZNF683Q8IZ20 524 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 FSTL5Q8N475 847 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 STYXQ8WUJ0 223 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 SCYL1Q96KG9 808 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 C8orf48Q96LL4 319 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 FNIP2Q9P278 1114 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 MYO16Q9Y6X6 1858 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 TMEM88BA6NKF7 163 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 NEBLO76041 1014 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 CKBP12277 381 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 ELNP15502 786 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 DNAJB1P25685 340 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 GRK4P32298 578 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 ABL2P42684 1182 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 OR1G1P47890 313 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 GRIA4P48058 902 aa21.09■□□□□ 0.97
CCDC88B-203ENST00000359902 WNT3AP56704 352 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms