RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CHST12Q9NRB3 414 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 RNF186Q9NXI6 227 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 RNF11Q9Y3C5 154 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 RALGAPA2Q2PPJ7 1873 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 TANC1Q9C0D5 1861 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 WDR27A2RRH5 827 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 TOP3BO95985 862 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 KCNE1P15382 129 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 CYP3A5P20815 502 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 ARRB2P32121 409 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 SERPINB5P36952 375 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 MRPS6P82932 125 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 INCA1Q0VD86 236 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 MTA1Q13330 715 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 IKBKEQ14164 716 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 HEATR6Q6AI08 1181 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 SCARA5Q6ZMJ2 495 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 LZTR1Q8N653 840 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 BEST2Q8NFU1 509 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 KIF12Q96FN5 646 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 IL22Q9GZX6 179 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 SNTG2Q9NY99 539 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 TJP2Q9UDY2 1190 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 GINS2Q9Y248 185 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 ANKRD6Q9Y2G4 727 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 AP4S1Q9Y587 144 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 TRPV2Q9Y5S1 764 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 A0A0A0MRY4 1105 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 PGK1P00558 417 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 CD4P01730 458 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 POLBP06746 335 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 HSPA1AP0DMV8 641 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 HSPA1BP0DMV9 641 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 GPD2P43304 727 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 RPL14P50914 215 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 APLP1P51693 650 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 ARHGEF6Q15052 776 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 CASC4Q6P4E1 433 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 CXCL17Q6UXB2 119 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 TMEM40Q8WWA1 233 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 RCN3Q96D15 328 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 HSPBAP1Q96EW2 488 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 TMEM176AQ96HP8 235 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 SPATA13Q96N96 652 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 RBBP8Q99708 897 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 EIF2AQ9BY44 585 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 DRC3Q9H069 523 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 HIPK3Q9H422 1215 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 SNX15Q9NRS6 342 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 UBQLN1Q9UMX0 589 aaKnown RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 CDYLQ9Y232 598 aa16.1■□□□□ 0.17
HMGA1-202ENST00000347617 TRIP12Q14669 1992 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-202ENST00000347617 G3V2L1 256 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 M0QYV0 167 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 CILPO75339 1184 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 ESRRBO95718 433 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 LIMK2P53671 638 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 CSE1LP55060 971 aaKnown RBP16.09■□□□□ 0.17
HMGA1-202ENST00000347617 PRMT2P55345 433 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 RHDQ02161 417 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 PEX6Q13608 980 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 CYTH1Q15438 398 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 ZNF829Q3KNS6 432 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-202ENST00000347617 UBXN11Q5T124 520 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 CLEC14AQ86T13 490 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 COLGALT2Q8IYK4 626 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 OR52B2Q96RD2 323 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 RANBP9Q96S59 729 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 ZBTB26Q9HCK0 441 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 NXF1Q9UBU9 619 aaKnown RBP16.09■□□□□ 0.17
HMGA1-202ENST00000347617 TUBGCP4Q9UGJ1 667 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 BARX2Q9UMQ3 279 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-202ENST00000347617 PCDHGB4Q9UN71 923 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 PIN4Q9Y237 131 aaKnown RBP16.09■□□□□ 0.17
HMGA1-202ENST00000347617 PCDHGB5Q9Y5G0 923 aa16.09■□□□□ 0.17
HMGA1-202ENST00000347617 PIK3R2O00459 728 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 TIMM44O43615 452 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 RNASEH2AO75792 299 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 CAPN15O75808 1086 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 STAMBPO95630 424 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 PRKAR2AP13861 404 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 ENO3P13929 434 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 CYP2F1P24903 491 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 SLC7A1P30825 629 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 MS4A2Q01362 244 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 TRIM25Q14258 630 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 GK3PQ14409 553 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 LSM12Q3MHD2 195 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 OR6B2Q6IFH4 312 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 GDF6Q6KF10 455 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 ATG14Q6ZNE5 492 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 NCCRP1Q6ZVX7 275 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 DQX1Q8TE96 717 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 SNRNP27Q8WVK2 155 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 PBXIP1Q96AQ6 731 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 CERS2Q96G23 380 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 TMEM79Q9BSE2 394 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 SNRNP25Q9BV90 132 aaKnown RBP16.08■□□□□ 0.17
HMGA1-202ENST00000347617 OXSMQ9NWU1 459 aa16.08■□□□□ 0.17
HMGA1-202ENST00000347617 MTMR10Q9NXD2 777 aa16.08■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms