RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 HIPK1Q86Z02 1210 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 FAM172AQ8WUF8 416 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 FAM126AQ9BYI3 521 aaPredicted RBP13.46□□□□□ -0.26
COL6A3-202ENST00000347401 SLC12A4Q9UP95 1085 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 FAM240BA0A1B0GVZ2 78 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 ATMINO43313 823 aaPredicted RBP13.46□□□□□ -0.26
COL6A3-202ENST00000347401 GSTT2BP0CG30 244 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 RRM1P23921 792 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 DSG3P32926 999 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 RPL21P46778 160 aaKnown RBP13.46□□□□□ -0.26
COL6A3-202ENST00000347401 SYCE2Q6PIF2 218 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 SLC30A8Q8IWU4 369 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 TUBGCP5Q96RT8 1024 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 GSDMCQ9BYG8 508 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 TRPC4Q9UBN4 977 aa13.46□□□□□ -0.26
COL6A3-202ENST00000347401 IQSEC2Q5JU85 1478 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 COX4I1P13073 169 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 DGKAP23743 735 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 DLG1Q12959 904 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 FGD3Q5JSP0 725 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 ASS1P00966 412 aaKnown RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 CSH1P0DML2 217 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 CSH2P0DML3 217 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PWP1Q13610 501 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 LACTB2Q53H82 288 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 KDELC2Q7Z4H8 507 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 MCOLN2Q8IZK6 566 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 COLGALT1Q8NBJ5 622 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 ZCWPW1Q9H0M4 648 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SSU72Q9NP77 194 aaKnown RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 FETUBQ9UGM5 382 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SP100P23497 879 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 ATP5F1P24539 256 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PTGS2P35354 604 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 TIE1P35590 1138 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 RGS7P49802 495 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 CLCN5P51795 746 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 ADAMTSL2Q86TH1 951 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 OFCC1Q8IZS5 231 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SYNPO2Q9UMS6 1093 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 BLMHQ13867 455 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PSMD5Q16401 504 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 LSM12Q3MHD2 195 aaKnown RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 CLYBLQ8N0X4 340 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 GALNT15Q8N3T1 639 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PTCD2Q8WV60 388 aaKnown RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 CRELD1Q96HD1 420 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 RERGLQ9H628 205 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SAE1Q9UBE0 346 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PRDM4Q9UKN5 801 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 COQ6Q9Y2Z9 468 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SNX8Q9Y5X2 465 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PCM1Q15154 2024 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PIGBOS1A0A0B4J2F0 54 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 AKIRIN2Q53H80 203 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 MILR1Q7Z6M3 343 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 C10orf107Q8IVU9 208 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SVOPLQ8N434 492 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 HMGXB4Q9UGU5 601 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 TAF6LQ9Y6J9 622 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 A0A087WZ62 844 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PLOD3O60568 738 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 SMNDC1O75940 238 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 BMP7P18075 431 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 PRDX5P30044 214 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 AVPR1AP37288 418 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 GPD2P43304 727 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 MAGEA2P43356 314 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 USP7Q93009 1102 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 RAVER2Q9HCJ3 691 aaKnown RBP13.45□□□□□ -0.26
COL6A3-202ENST00000347401 CATSPERZQ9NTU4 200 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 MCUBQ9NWR8 336 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 NEURL4Q96JN8 1562 aa13.45□□□□□ -0.26
COL6A3-202ENST00000347401 NTSP30990 170 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 KLK7P49862 253 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 DGCR6Q14129 220 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 SIX5Q8N196 739 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 C2orf69Q8N8R5 385 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 OR6J1Q8NGC5 347 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 LENG9Q96B70 501 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 PRELID1Q9Y255 219 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 AP4B1Q9Y6B7 739 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 NCANO14594 1321 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 SEC22BO75396 215 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 GLRBP48167 497 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 HERC3Q15034 1050 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 ZNF720Q7Z2F6 126 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 DNAAF5Q86Y56 855 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 TEX47Q8TBZ9 253 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 NELL1Q92832 810 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 YIPF2Q9BWQ6 316 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 CHKBQ9Y259 395 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 FRMPD4Q14CM0 1322 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 RTN3O95197 1032 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-202ENST00000347401 ANXA8L1Q5VT79 327 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 RPTNQ6XPR3 784 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 TMC7Q7Z402 723 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 TMEM176AQ96HP8 235 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 TRPV5Q9NQA5 729 aa13.44□□□□□ -0.26
COL6A3-202ENST00000347401 NECTIN3Q9NQS3 549 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms