RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TDRD5Q8NAT2 981 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 NXNL1Q96CM4 212 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 HMCESQ96FZ2 354 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 DCLRE1BQ9H816 532 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 AAR2Q9Y312 384 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TET1Q8NFU7 2136 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 NEMP2A6NFY4 417 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TIMM44O43615 452 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TRIM13O60858 407 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 AOC2O75106 756 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CKBP12277 381 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CCNCP24863 283 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 EPHA3P29320 983 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 SERPINB5P36952 375 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CD86P42081 329 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 SLC10A7Q0GE19 358 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 MAPRE1Q15691 268 aaKnown RBP10.49□□□□□ -0.73
LIMA1-201ENST00000341247 MGAT5BQ3V5L5 792 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CTXN3Q4LDR2 81 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 ULK2Q8IYT8 1036 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 OR52B2Q96RD2 323 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 NUF2Q9BZD4 464 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 CYP4F12Q9HCS2 524 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 TBC1D13Q9NVG8 400 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 RAD54BQ9Y620 910 aa10.49□□□□□ -0.73
LIMA1-201ENST00000341247 THSD7BQ9C0I4 1608 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 MATN3O15232 486 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SKAP2O75563 359 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PSMG1O95456 288 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 IGLV3-25P01717 112 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PIRTP0C851 137 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CPB1P15086 417 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 GRK2P25098 689 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SLC1A2P43004 574 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PLK1P53350 603 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 WNT3AP56704 352 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 DSC2Q02487 901 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SREBF2Q12772 1141 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ANO4Q32M45 955 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CCDC153Q494R4 210 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PCID2Q5JVF3 399 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 DENND5AQ6IQ26 1287 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 RIPOR1Q6ZS17 1223 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PTAR1Q7Z6K3 402 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 KLHDC9Q8NEP7 349 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PPHLN1Q8NEY8 458 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 RAB3IL1Q8TBN0 382 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 GIPC2Q8TF65 315 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SMOC2Q9H3U7 446 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 XPR1Q9UBH6 696 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SLC7A8Q9UHI5 535 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 MTF2Q9Y483 593 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PTPRDP23468 1912 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 FAM95CA0A1B0GW59 222 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 OR51F1A6NGY5 319 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 TMEM233B4DJY2 109 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SCAMP3O14828 347 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ARNTP27540 789 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 GRIA4P48058 902 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 TBX4P57082 545 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CUL3Q13618 768 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PTPRCAPQ14761 206 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PDCD2Q16342 344 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 C10orf120Q5SQS8 335 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 RBM20Q5T481 1227 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SNX30Q5VWJ9 437 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CNSTQ6PJW8 725 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 LINC00523Q86TU6 105 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ZNF598Q86UK7 904 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 FSTL5Q8N475 847 aaPredicted RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 NRG4Q8WWG1 115 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 LINC01599Q8WXQ3 324 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PSMG2Q969U7 264 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 NAF1Q96HR8 494 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 MRGPRX2Q96LB1 330 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 UPF3AQ9H1J1 476 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CXorf56Q9H5V9 222 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ACTL7AQ9Y615 435 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 MAGEB16A2A368 324 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CIB2O75838 187 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ANXA9O76027 345 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PIGNO95427 931 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SLC4A1P02730 911 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 SLC35E2BP0CK96 405 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ACLYP53396 1101 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CSHL1Q14406 222 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 INSCQ1MX18 579 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 LRRC36Q1X8D7 754 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 VARS2Q5ST30 1063 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 CFAP52Q8N1V2 620 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 RTL3Q8N8U3 475 aaKnown RBP10.48□□□□□ -0.73
LIMA1-201ENST00000341247 OR6P1Q8NGX9 317 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 DPF3Q92784 378 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 PANX3Q96QZ0 392 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 HAPLN3Q96S86 360 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 KIFC1Q9BW19 673 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ADAM28Q9UKQ2 775 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 KCTD3Q9Y597 815 aa10.48□□□□□ -0.73
LIMA1-201ENST00000341247 ZBTB14O43829 449 aa10.47□□□□□ -0.73
LIMA1-201ENST00000341247 MPOP05164 745 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms