RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ZNF235Q14590 738 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 TEX44Q53QW1 395 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 EOGTQ5NDL2 527 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 C9orf64Q5T6V5 341 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 PCDH20Q8N6Y1 951 aaKnown RBP22.53■■□□□ 1.2
SDC3-202ENST00000339394 ERLEC1Q96DZ1 483 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 EXOC2Q96KP1 924 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 IL12RB2Q99665 862 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 C2orf42Q9NWW7 574 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 LHX3Q9UBR4 397 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 CDC23Q9UJX2 597 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 ZNF148Q9UQR1 794 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 GOLGA6L10A0A0M3HER8 536 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 TARSL2A2RTX5 802 aaKnown RBP22.52■■□□□ 1.2
SDC3-202ENST00000339394 KCNN4O15554 427 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 BNIP3LO60238 219 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 SYNCRIPO60506 623 aaKnown RBP22.52■■□□□ 1.2
SDC3-202ENST00000339394 PTPN3P26045 913 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 MTAPQ13126 283 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 CYP1B1Q16678 543 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 TMEM92Q6UXU6 159 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 SYT13Q7L8C5 426 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 BMP8AQ7Z5Y6 402 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 BBS5Q8N3I7 341 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 PGBD5Q8N414 524 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 CNTD1Q8N815 330 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 OR2A12Q8NGT7 310 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 MAGOHBQ96A72 148 aaKnown RBP22.52■■□□□ 1.2
SDC3-202ENST00000339394 NT5MQ9NPB1 228 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 PRSS16Q9NQE7 514 aa22.52■■□□□ 1.2
SDC3-202ENST00000339394 SIN3BO75182 1162 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 ITGAVP06756 1048 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 KCNJ1P48048 391 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 NRLP54845 237 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 CRY1Q16526 586 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 ATXN7L2Q5T6C5 722 aaPredicted RBP22.51■■□□□ 1.19
SDC3-202ENST00000339394 KIAA1211LQ6NV74 962 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 SPEM1Q8N4L4 309 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 FAM71DQ8N9W8 422 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 C12orf50Q8NA57 414 aaPredicted RBP22.51■■□□□ 1.19
SDC3-202ENST00000339394 OR2AP1Q8NGE2 309 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 AGAP3Q96P47 875 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 FERMT1Q9BQL6 677 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 MGME1Q9BQP7 344 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 CD248Q9HCU0 757 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 AMACRQ9UHK6 382 aa22.51■■□□□ 1.19
SDC3-202ENST00000339394 DRG1Q9Y295 367 aaKnown RBP22.51■■□□□ 1.19
SDC3-202ENST00000339394 RNF103O00237 685 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 NEBLO76041 1014 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 HLA-DQB2P05538 268 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 STIP1P31948 543 aaKnown RBP22.5■■□□□ 1.19
SDC3-202ENST00000339394 MAGEA9P43362 315 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 RGRP47804 291 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 GDF10P55107 478 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 MAXP61244 160 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 SNRPD1P62314 119 aaKnown RBP22.5■■□□□ 1.19
SDC3-202ENST00000339394 NSUN2Q08J23 767 aaKnown RBP eCLIP22.5■■□□□ 1.19
SDC3-202ENST00000339394 CAMK2GQ13555 558 aaPredicted RBP22.5■■□□□ 1.19
SDC3-202ENST00000339394 STARD3Q14849 445 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 CARD16Q5EG05 197 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 DPY19L3Q6ZPD9 716 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 PLPP6Q8IY26 295 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 TTLL3Q9Y4R7 772 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 MUC22E2RYF6 1773 aaPredicted RBP22.5■■□□□ 1.19
SDC3-202ENST00000339394 GSRP00390 522 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 COL9A1P20849 921 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 HSPA9P38646 679 aaKnown RBP22.5■■□□□ 1.19
SDC3-202ENST00000339394 RECQLP46063 649 aaPredicted RBP22.5■■□□□ 1.19
SDC3-202ENST00000339394 TTC27Q6P3X3 843 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 ZNF567Q8N184 647 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 FBXL6Q8N531 539 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 OR6K2Q8NGY2 324 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 TEKT5Q96M29 485 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 GDAP1L1Q96MZ0 367 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 VAT1Q99536 393 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 ATP8A1Q9Y2Q0 1164 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 MRFAP1Q9Y605 127 aa22.5■■□□□ 1.19
SDC3-202ENST00000339394 CFAP69A5D8W1 941 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 PHF2O75151 1096 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 GJB3O75712 270 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 ZNF189O75820 626 aaPredicted RBP22.49■■□□□ 1.19
SDC3-202ENST00000339394 IGSF6O95976 241 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 SCNN1BP51168 640 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 CCNHP51946 323 aaPredicted RBP22.49■■□□□ 1.19
SDC3-202ENST00000339394 ITKQ08881 620 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 TUBB2AQ13885 445 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 ELAVL3Q14576 367 aaKnown RBP22.49■■□□□ 1.19
SDC3-202ENST00000339394 STK40Q8N2I9 435 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 RYBPQ8N488 228 aaPredicted RBP22.49■■□□□ 1.19
SDC3-202ENST00000339394 TMEM105Q8N8V8 129 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 CHST14Q8NCH0 376 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 CCDC114Q96M63 670 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 FAM129BQ96TA1 746 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 IER2Q9BTL4 223 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 TUBB2BQ9BVA1 445 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 POLR1EQ9GZS1 481 aaKnown RBP22.49■■□□□ 1.19
SDC3-202ENST00000339394 C11orf16Q9NQ32 467 aa22.49■■□□□ 1.19
SDC3-202ENST00000339394 KLHL8Q9P2G9 620 aaPredicted RBP22.49■■□□□ 1.19
SDC3-202ENST00000339394 TTC24A2A3L6 582 aaPredicted RBP22.48■■□□□ 1.19
SDC3-202ENST00000339394 ZBTB24O43167 697 aaPredicted RBP22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms