RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SYN2Q92777 582 aaPredicted RBP16.61■□□□□ 0.25
LSM1-201ENST00000311351 TRIM11Q96F44 468 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 SERAC1Q96JX3 654 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 KCTD15Q96SI1 283 aaPredicted RBP16.61■□□□□ 0.25
LSM1-201ENST00000311351 KDM4CQ9H3R0 1056 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 DYRK4Q9NR20 520 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 ARHGAP20Q9P2F6 1191 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 EPG5Q9HCE0 2579 aa16.61■□□□□ 0.25
LSM1-201ENST00000311351 TRPM6Q9BX84 2022 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 A0A1W2PR77 199 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 RASA4BC9J798 803 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 VILLO15195 856 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 FGF10O15520 208 aaPredicted RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 RASA4O43374 803 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 KDELR3O43731 214 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 RNGTTO60942 597 aaKnown RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 LRCH4O75427 683 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 TMCC1O94876 653 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 TOP3BO95985 862 aaKnown RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 SERPING1P05155 500 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 MYBL1P10243 752 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 MIPP30301 263 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 CASP14P31944 242 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 C21orf59P57076 290 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 IL9RQ01113 521 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 ATXN7L2Q5T6C5 722 aaPredicted RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 NAPEPLDQ6IQ20 393 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 ERN2Q76MJ5 926 aaKnown RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 PARS2Q7L3T8 475 aaKnown RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 TRIM69Q86WT6 500 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 RYBPQ8N488 228 aaPredicted RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 KLK6Q92876 244 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 CNTNAP3BQ96NU0 1288 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 MYOCQ99972 504 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 HEPHQ9BQS7 1158 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 CNTNAP3Q9BZ76 1288 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 THAP2Q9H0W7 228 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 TSPY26PQ9H489 355 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 CATSPERBQ9H7T0 1116 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 PREBQ9HCU5 417 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 ANGPTL2Q9UKU9 493 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 HPCAL4Q9UM19 191 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 CA5BQ9Y2D0 317 aa16.6■□□□□ 0.25
LSM1-201ENST00000311351 LUC7L2Q9Y383 392 aaKnown RBP16.6■□□□□ 0.25
LSM1-201ENST00000311351 A0A087X0T9 212 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 WASH4PA8MWX3 477 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 EEF2KO00418 725 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 BUB1O43683 1085 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 PRPSAP2O60256 369 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 RNF8O76064 485 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 FAM228BP0C875 321 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 ZNF883P0CG24 379 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 TCF4P15884 667 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 PRLRP16471 622 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 SPINK2P20155 84 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 CD38P28907 300 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 GEMIN4P57678 1058 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 ZNF423Q2M1K9 1284 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 PRAMEF14Q5SWL7 426 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 ERMARDQ5T6L9 678 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 PRPF39Q86UA1 669 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 VPS36Q86VN1 386 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 RNF214Q8ND24 703 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 SETD7Q8WTS6 366 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 VOPP1Q96AW1 172 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 ISG20Q96AZ6 181 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 IQCDQ96DY2 449 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 PPP1R16AQ96I34 528 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 CELF6Q96J87 481 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 MRPL47Q9HD33 250 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 BTBD3Q9Y2F9 522 aa16.59■□□□□ 0.25
LSM1-201ENST00000311351 BZW2Q9Y6E2 419 aaKnown RBP16.59■□□□□ 0.25
LSM1-201ENST00000311351 CXorf51AA0A1B0GTR3 108 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 A0A1W2PQU0 124 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 KRIT1O00522 736 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 GSRP00390 522 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 ITGB7P26010 798 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 CCT8P50990 548 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 NEK3P51956 506 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 SERINC3Q13530 473 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 NFKBIBQ15653 356 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 SMTNL2Q2TAL5 461 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 PARP15Q460N3 678 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 SETMARQ53H47 684 aaPredicted RBP16.58■□□□□ 0.24
LSM1-201ENST00000311351 PPP6R3Q5H9R7 873 aaPredicted RBP16.58■□□□□ 0.24
LSM1-201ENST00000311351 UMODL1-AS1Q8N2C9 162 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 OR2AP1Q8NGE2 309 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 ARHGEF26Q96DR7 871 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 BTBD6Q96KE9 485 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 HDAC8Q9BY41 377 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 LRRC19Q9H756 370 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 FZD3Q9NPG1 666 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 PCOLCE2Q9UKZ9 415 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 TPX2Q9ULW0 747 aaKnown RBP16.58■□□□□ 0.24
LSM1-201ENST00000311351 FRYQ5TBA9 3013 aa16.58■□□□□ 0.24
LSM1-201ENST00000311351 ANKRD36A6QL64 1941 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 ZSCAN5CA6NGD5 496 aaPredicted RBP16.57■□□□□ 0.24
LSM1-201ENST00000311351 CBFA2T3O75081 653 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 PCDH8O95206 1070 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 UGT2B4P06133 528 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms