RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SGCDQ92629 289 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 HPS1Q92902 700 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 MCRS1Q96EZ8 462 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 CCDC97Q96F63 343 aaPredicted RBP14.57□□□□□ -0.08
SDC1-201ENST00000254351 ZFYVE28Q9HCC9 887 aa14.57□□□□□ -0.08
SDC1-201ENST00000254351 A6NL46 340 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 CES1P23141 567 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 CNTFP26441 200 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 NAMPTP43490 491 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 PIGFQ07326 219 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 DNASE1L3Q13609 305 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 GRM3Q14832 879 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 CCDC153Q494R4 210 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 PIWIL3Q7Z3Z3 882 aaKnown RBP14.56□□□□□ -0.08
SDC1-201ENST00000254351 SLC41A1Q8IVJ1 513 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 TMCO5AQ8N6Q1 288 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 ACMSDQ8TDX5 336 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 BORCS5Q969J3 196 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 FAM149B1Q96BN6 582 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 PHF21BQ96EK2 531 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 P2RY11Q96G91 374 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 VPS50Q96JG6 964 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 HERC2P3Q9BVR0 1158 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 POLE4Q9NR33 117 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 KLHL8Q9P2G9 620 aaPredicted RBP14.56□□□□□ -0.08
SDC1-201ENST00000254351 XPR1Q9UBH6 696 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 WARS2Q9UGM6 360 aaKnown RBP14.56□□□□□ -0.08
SDC1-201ENST00000254351 DAPK2Q9UIK4 370 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 SLC8A2Q9UPR5 921 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 A0A087WXM4 84 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 HEATR9A2RTY3 570 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 ZBBXA8MT70 800 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 MFSD11O43934 449 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 GPC4O75487 556 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 PRKCBP05771 671 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 CHRM3P20309 590 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 YWHAQP27348 245 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 SPRP35270 261 aaPredicted RBP14.56□□□□□ -0.08
SDC1-201ENST00000254351 TXNL4AP83876 142 aaKnown RBP14.56□□□□□ -0.08
SDC1-201ENST00000254351 IFRD2Q12894 506 aaPredicted RBP14.56□□□□□ -0.08
SDC1-201ENST00000254351 CTBP1Q13363 440 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 PDK2Q15119 407 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 PGS1Q32NB8 556 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 ZBED5Q49AG3 693 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 NIPA1Q7RTP0 329 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 C1orf127Q8N9H9 656 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 BIRC8Q96P09 236 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 HIPK3Q9H422 1215 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 SPON1Q9HCB6 807 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 SIX4Q9UIU6 781 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 OAZ3Q9UMX2 235 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 SLC27A5Q9Y2P5 690 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 RAP2CQ9Y3L5 183 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 STYXL1Q9Y6J8 313 aa14.56□□□□□ -0.08
SDC1-201ENST00000254351 H0YCG3 227 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 CLOCKO15516 846 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 NDUFB5O43674 189 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 KDM1AO60341 852 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 FASTKQ14296 549 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 PDCD4Q53EL6 469 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 BOLA3Q53S33 107 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 DLG3Q92796 817 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 TANKQ92844 425 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 EXT2Q93063 718 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ASB9Q96DX5 294 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 TSNARE1Q96NA8 513 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 NPLQ9BXD5 320 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 FRMD8Q9BZ67 464 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 TBCCD1Q9NVR7 557 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 OXSMQ9NWU1 459 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 GREB1LQ9C091 1923 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 CFAP99D6REC4 459 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 TPD52L2O43399 206 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 LSM3P62310 102 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 RHDQ02161 417 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 NHSL2Q5HYW2 709 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 PPP1R26Q5T8A7 1209 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 CLEC6AQ6EIG7 209 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ABHD15Q6UXT9 468 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 FSTL5Q8N475 847 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 ZNF280CQ8ND82 737 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 APBB2Q92870 758 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 TAMM41Q96BW9 452 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 VPS39Q96JC1 886 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 CSPG4P5Q96PW8 444 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 KCTD15Q96SI1 283 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 RBBP8Q99708 897 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ADI1Q9BV57 179 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 RPAP3Q9H6T3 665 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 ZNF70Q9UC06 446 aaPredicted RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 SIPA1L1O43166 1804 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 NOL3O60936 208 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 GCATO75600 419 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ENDOD1O94919 500 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 MTHFD1P11586 935 aaKnown RBP14.55□□□□□ -0.08
SDC1-201ENST00000254351 NCK1P16333 377 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 MATN1P21941 496 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ELK4P28324 431 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 ADORA2BP29275 332 aa14.55□□□□□ -0.08
SDC1-201ENST00000254351 NKX2-5P52952 324 aaPredicted RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms